| Literature DB >> 33080996 |
Ahmed A Noser1, Mohamed El-Naggar2, Thoria Donia3, Aboubakr H Abdelmonsef4.
Abstract
A series of novel quinazolinone derivatives (2-13) was synthesized and examined for theirEntities:
Keywords: AKT1; cancer; cytotoxic activity; docking study; quinazolinone
Mesh:
Substances:
Year: 2020 PMID: 33080996 PMCID: PMC7594071 DOI: 10.3390/molecules25204780
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1The synthesis pathway of compounds 2–5 from compound 1.
Scheme 2The synthesis pathway of compounds 6–10 from compound 1.
Scheme 3The synthesis pathway of compounds 11–13 from compound 1.
The binding free energy ΔGb (kcal/mol) of the newly synthetic compounds with AKT after molecular docking.
| Structure | Binding Energy | Docked Complex (Amino Acid-Ligand) Interactions | Distance (A°) | |
|---|---|---|---|---|
| 2 |
| −7.9 |
| |
| compound 2—TRP191 | 4.07 | |||
| compound 2—TRP191 | 3.90 | |||
| 3 |
| −9.3 |
| |
| compound 3—ARG59:O | 2.33 | |||
|
| ||||
| compound 3—TYR46 | 4.04 | |||
| compound 3— TYR46 | 5.10 | |||
| 4 |
| −10.2 |
| |
| compound 4—TYR180:HE1 | 2.84 | |||
| 5 |
| −8.5 |
| |
| compound 5—TRP191 | 3.92 | |||
| compound 5—TRP191 | 3.91 | |||
| compound 5—TRP191 | 3.99 | |||
| compound 5—TRP191 | 4.51 | |||
|
| ||||
| compound 5—LYS196:NZ | 6.19 | |||
| 6 |
| −8.0 |
| |
| compound 6—TRP191 | 4.41 | |||
| compound 6—TRP191 | 3.94 | |||
| 9 |
| −9.8 |
| |
| compound 9—PHE193 | 4.00 | |||
| 10 |
| −7.7 |
| |
| compound 10—TRP191 | 3.65 | |||
| compound 10—TYR180:HE1 | 2.72 | |||
| 11 |
| −8.9 |
| |
| compound 11—GLN178:HE22 | 2.10 | |||
| compound 11—GLN178:HE22 | 2.09 | |||
| compound 11—-PRO176:O | 2.07 | |||
| 12 |
| −9.2 |
| |
| compound 12—TRP191:HE1 | 2.48 | |||
| compound 12—ASP204:OD1 | 2.24 | |||
|
| ||||
| compound 12—TRP191 | 3.90 | |||
| compound 12— TRP191 | 3.99 | |||
| compound 12— TRP191 | 3.87 | |||
| compound 12— TRP191 | 5.10 | |||
|
| ||||
| compound 12—LYS196:NZ | 4.67 | |||
| compound 12—LYS196:NZ | 5.24 | |||
| 13 |
| −9.1 |
| |
| compound 13— TRP191 | 4.01 | |||
| compound 13— TRP191 | 4.41 | |||
| compound 13— PHE193 | 5.34 | |||
| compound 13— PHE193 | 4.80 |
All synthesized molecules with the best binding energy are represented with docking interactions in the table showing H-bonding, π–π, π–cation, and π–σ interactions.
Figure 1Binding modes/interactions of the synthetic compounds with active sites of AKT1 protein. (Left side) 2D representations demonstrating the molecular interactions between compounds and the active site region of AKT1 protein. The amino acid residues are shown in three-letter code, H-bonds are in pink doted lines, and π-interactions are in yellow lines. (Right side) 3D representations demonstrating the molecular interactions between compounds and the active site region of AKT1 protein. The compounds are represented by blue stick models, while the active site regions are shown by green stick models. H-bond contacts are shown in pink dotted lines, while -stacking is shown in yellow lines.
List of ADMET properties of the newly synthesized molecules.
| Molecular Weight | Blood–brain | Human Intestinal | Caco-2 | AMES Toxicity | Carcinogenicity | |
|---|---|---|---|---|---|---|
| 2 | 342.35 | 0.958 | 0.969 | 0.619 | Nontoxic | Non carcinogenic |
| 3 | 342.35 | 0.958 | 0.969 | 0.619 | Nontoxic | Non carcinogenic |
| 4 | 566.79 | 0.979 | 0.995 | 0.531 | Nontoxic | Non carcinogenic |
| 5 | 566.79 | 0.979 | 0.995 | 0.531 | Nontoxic | Non carcinogenic |
| 6 | 314.34 | 0.975 | 0.997 | 0.548 | Nontoxic | Non carcinogenic |
| 9 | 398.46 | 0.977 | 0.997 | 0.600 | Nontoxic | Non carcinogenic |
| 10 | 398.46 | 0.977 | 0.997 | 0.600 | Nontoxic | Non carcinogenic |
| 11 | 444.47 | 0.615 | 0.859 | 0.586 | Nontoxic | Non carcinogenic |
| 12 | 514.56 | 0.670 | 0.840 | 0.601 | Nontoxic | Non carcinogenic |
| 13 | 528.59 | 0.692 | 0.856 | 0.596 | Nontoxic | Non carcinogenic |
The pharmacokinetic properties of the synthesized molecules are evaluated by admetSAR.
Physicochemical properties of the synthesized compounds.
| TPSA (A2) | HBA | HBD | N rotatable | Volume (A3) | |
|---|---|---|---|---|---|
| 2 | 72.20 | 5 | 1 | 3 | 298.05 |
| 3 | 72.20 | 5 | 1 | 3 | 298.05 |
| 4 | 61.20 | 5 | 0 | 19 | 567.60 |
| 5 | 61.20 | 5 | 0 | 19 | 567.60 |
| 6 | 55.12 | 4 | 1 | 2 | 279.06 |
| 9 | 61.20 | 5 | 0 | 6 | 365.77 |
| 10 | 61.20 | 5 | 0 | 6 | 365.77 |
| 11 | 109.50 | 7 | 2 | 3 | 362.51 |
| 12 | 115.57 | 8 | 1 | 7 | 432.62 |
| 13 | 115.57 | 8 | 1 | 8 | 449.42 |
TPSA, topological polar surface area; HBA, number of hydrogen bond acceptors; HBD, number of hydrogen bond donors; N rotatable, number of rotatable bonds.
Figure 2ABTS radical scavenging antioxidant activity of compounds 4 and 9. The IC50 values of each drug are expressed as mean ± SE of three independent experiments performed in triplets calculated and plotted using Graphpad Prism software 6 (San Diego, CA, USA).
Figure 3Compounds 4 and 9 and doxorubicin inhibit proliferation in different cancer cell lines. Cells were treated with various concentrations of each compound for 48 h and cell viability was plotted against drug concentration to calculate IC50. The IC50 values of each drug are expressed as mean ± SE of three independent experiments performed in triplets calculated and plotted using Graphpad Prism software 6 (San Diego, CA).
IC50 of compound 4 and compound 9 as well as doxorubicin (as a reference drug) on different cancer cell lines.
| IC50 | |||
|---|---|---|---|
| Compound | HepG2 | MCF-7 | Caco-2 |
| 4 | 53.29 ± 0.25 | 72.22 ± 0.14 | 23.31 ± 0.09 |
| 9 | 171.4 ± 0.12 | 96.58 ± 0.17 | 73.87 ± 0.13 |
| Doxorubicin | 49.38 ± 0.15 | 58.1 ± 0.07 | 5.7 ±1.2 |
Data are expressed as mean ± SE for three independent experiments using Graphpad Prism software 6 (San Diego, CA, USA).