Literature DB >> 33079625

Proposed clinical indicators for efficient screening and testing for COVID-19 infection using Classification and Regression Trees (CART) analysis.

Richard K Zimmerman1, Mary Patricia Nowalk1, Todd Bear2, Rachel Taber2, Karen S Clarke1, Theresa M Sax3, Heather Eng3, Lloyd G Clarke4, G K Balasubramani3.   

Abstract

The introduction and rapid transmission of SARS-CoV-2 in the United States resulted in methods to assess, mitigate, and contain the resulting COVID-19 disease derived from limited knowledge. Screening for testing has been based on symptoms typically observed in inpatients, yet outpatient symptoms may differ. Classification and regression trees recursive partitioning created a decision tree classifying participants into laboratory-confirmed cases and non-cases. Demographic and symptom data from patients ages 18-87 years enrolled from March 29-June 8, 2020 were included. Presence or absence of SARS-CoV-2 was the target variable. Of 832 tested, 77 (9.3%) tested positive. Cases significantly more often reported diarrhea (12 percentage points (PP)), fever (15 PP), nausea/vomiting (9 PP), loss of taste/smell (52 PP), and contact with a COVID-19 case (54 PP), but less frequently reported sore throat (-27 PP). The 4-terminal node optimal tree had sensitivity of 69%, specificity of 78%, positive predictive value of 20%, negative predictive value of 97%, and AUC of 76%. Among those referred for testing, negative responses to two questions could classify about half (49%) of tested persons with low risk for SARS-CoV-2 and would save limited testing resources. Outpatient symptoms of COVID-19 appear to be broader than the inpatient syndrome.Initial supplies of anticipated COVID-19 vaccines may be limited and administration of first such available vaccines may need to be prioritized for essential workers, the most vulnerable, or those likely to have a robust response to vaccine. Another priority group could be those not previously infected. Those who screen out of testing may be less likely to have been infected by SARS-CoV-2 virus thus may be prioritized for vaccination when supplies are limited.

Entities:  

Keywords:  COVID-19; SARS-CoV-2; classification trees; screening; symptoms

Mesh:

Year:  2020        PMID: 33079625     DOI: 10.1080/21645515.2020.1822135

Source DB:  PubMed          Journal:  Hum Vaccin Immunother        ISSN: 2164-5515            Impact factor:   3.452


  9 in total

1.  Taste loss as a distinct symptom of COVID-19: a systematic review and meta-analysis.

Authors:  Mackenzie E Hannum; Riley J Koch; Vicente A Ramirez; Sarah S Marks; Aurora K Toskala; Riley D Herriman; Cailu Lin; Paule V Joseph; Danielle R Reed
Journal:  Chem Senses       Date:  2022-01-01       Impact factor: 3.160

Review 2.  Signs and symptoms to determine if a patient presenting in primary care or hospital outpatient settings has COVID-19.

Authors:  Thomas Struyf; Jonathan J Deeks; Jacqueline Dinnes; Yemisi Takwoingi; Clare Davenport; Mariska Mg Leeflang; René Spijker; Lotty Hooft; Devy Emperador; Julie Domen; Anouk Tans; Stéphanie Janssens; Dakshitha Wickramasinghe; Viktor Lannoy; Sebastiaan R A Horn; Ann Van den Bruel
Journal:  Cochrane Database Syst Rev       Date:  2022-05-20

3.  Signs and symptoms to determine if a patient presenting in primary care or hospital outpatient settings has COVID-19.

Authors:  Thomas Struyf; Jonathan J Deeks; Jacqueline Dinnes; Yemisi Takwoingi; Clare Davenport; Mariska Mg Leeflang; René Spijker; Lotty Hooft; Devy Emperador; Julie Domen; Sebastiaan R A Horn; Ann Van den Bruel
Journal:  Cochrane Database Syst Rev       Date:  2021-02-23

4.  Clinical Symptoms Among Ambulatory Patients Tested for SARS-CoV-2.

Authors:  Jessie R Chung; Sara S Kim; Michael L Jackson; Lisa A Jackson; Edward A Belongia; Jennifer P King; Richard K Zimmerman; Mary Patricia Nowalk; Emily T Martin; Arnold S Monto; Manjusha Gaglani; Michael E Smith; Manish Patel; Brendan Flannery
Journal:  Open Forum Infect Dis       Date:  2020-11-26       Impact factor: 3.835

5.  Variables associated with COVID-19 severity: an observational study of non-paediatric confirmed cases from the general population of the Basque Country, Spain.

Authors:  Kalliopi Vrotsou; Rafael Rotaeche; Maider Mateo-Abad; Mónica Machón; Itziar Vergara
Journal:  BMJ Open       Date:  2021-04-01       Impact factor: 2.692

6.  Factors associated with COVID-19 viral and antibody test positivity and assessment of test concordance: a retrospective cohort study using electronic health records from the USA.

Authors:  Lisa Lindsay; Matthew H Secrest; Shemra Rizzo; Daniel S Keebler; Fei Yang; Larry Tsai
Journal:  BMJ Open       Date:  2021-10-01       Impact factor: 3.006

7.  Taste loss as a distinct symptom of COVID-19: A systematic review and meta-analysis.

Authors:  Mackenzie E Hannum; Riley J Koch; Vicente A Ramirez; Sarah S Marks; Aurora K Toskala; Riley D Herriman; Cailu Lin; Paule V Joseph; Danielle R Reed
Journal:  medRxiv       Date:  2021-10-09

8.  Research on the Epidemiology of SARS-CoV-2 in Essential Response Personnel (RECOVER): Protocol for a Multisite Longitudinal Cohort Study.

Authors:  Laura J Edwards; Ashley L Fowlkes; Meredith G Wesley; Jennifer L Kuntz; Marilyn J Odean; Alberto J Caban-Martinez; Kayan Dunnigan; Andrew L Phillips; Lauren Grant; Meghan K Herring; Holly C Groom; Karley Respet; Shawn Beitel; Tnelda Zunie; Kurt T Hegmann; Archana Kumar; Gregory Joseph; Brandon Poe; Paola Louzado-Feliciano; Michael E Smith; Matthew S Thiese; Natasha Schaefer-Solle; Young M Yoo; Carlos A Silvera; Julie Mayo Lamberte; Josephine Mak; L Clifford McDonald; Matthew J Stuckey; Preeta Kutty; Melissa L Arvay; Sarang K Yoon; Harmony L Tyner; Jefferey L Burgess; Danielle Rentz Hunt; Jennifer Meece; Manjusha Gaglani; Allison L Naleway; Mark G Thompson
Journal:  JMIR Res Protoc       Date:  2021-12-03

Review 9.  Exploring the Clinical Utility of Gustatory Dysfunction (GD) as a Triage Symptom Prior to Reverse Transcription Polymerase Chain Reaction (RT-PCR) in the Diagnosis of COVID-19: A Meta-Analysis and Systematic Review.

Authors:  Khang Wen Pang; Sher-Lyn Tham; Li Shia Ng
Journal:  Life (Basel)       Date:  2021-11-29
  9 in total

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