Literature DB >> 33078839

Intrinsically disordered protein regions and phase separation: sequence determinants of assembly or lack thereof.

Erik W Martin1, Alex S Holehouse2,3.   

Abstract

Intrinsically disordered protein regions (IDRs) - regions that do not fold into a fixed three-dimensional structure but instead exist in a heterogeneous ensemble of conformations - have recently entered mainstream cell biology in the context of liquid-liquid phase separation (LLPS). IDRs are frequently found to be enriched in phase-separated compartments. Due to this observation, the presence of an IDR in a protein is frequently assumed to be diagnostic of its ability to phase separate. In this review, we clarify the role of IDRs in biological assembly and explore the physical principles through which amino acids can confer the attractive molecular interactions that underlie phase separation. While some disordered regions will robustly drive phase separation, many others will not. We emphasize that rather than 'disorder' driving phase separation, multivalency drives phase separation. As such, whether or not a disordered region is capable of driving phase separation will depend on the physical chemistry encoded within its amino acid sequence. Consequently, an in-depth understanding of that physical chemistry is a prerequisite to make informed inferences on how and why an IDR may be involved in phase separation or, more generally, in protein-mediated intermolecular interactions.
© 2020 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society and the Royal Society of Biology.

Keywords:  biomolecular condensates; intrinsically disordered proteins; phase separation; physical chemistry

Year:  2020        PMID: 33078839     DOI: 10.1042/ETLS20190164

Source DB:  PubMed          Journal:  Emerg Top Life Sci        ISSN: 2397-8554


  32 in total

1.  The L1-ORF1p coiled coil enables formation of a tightly compacted nucleic acid-bound complex that is associated with retrotransposition.

Authors:  Ben A Cashen; M Nabuan Naufer; Michael Morse; Charles E Jones; Mark C Williams; Anthony V Furano
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

2.  Probing Liquid-Liquid Phase Separation of RNA-Binding Proteins In Vitro and In Vivo.

Authors:  Stephanie Heinrich; Maria Hondele
Journal:  Methods Mol Biol       Date:  2022

3.  An Introduction to the Stickers-and-Spacers Framework as Applied to Biomolecular Condensates.

Authors:  Garrett M Ginell; Alex S Holehouse
Journal:  Methods Mol Biol       Date:  2023

4.  Shelterin Components Modulate Nucleic Acids Condensation and Phase Separation in the Context of Telomeric DNA.

Authors:  Andrea Soranno; J Jeremías Incicco; Paolo De Bona; Eric J Tomko; Eric A Galburt; Alex S Holehouse; Roberto Galletto
Journal:  J Mol Biol       Date:  2022-06-17       Impact factor: 6.151

Review 5.  A conceptual framework for understanding phase separation and addressing open questions and challenges.

Authors:  Tanja Mittag; Rohit V Pappu
Journal:  Mol Cell       Date:  2022-06-07       Impact factor: 19.328

Review 6.  Combating deleterious phase transitions in neurodegenerative disease.

Authors:  April L Darling; James Shorter
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2021-02-05       Impact factor: 4.739

Review 7.  Liquid-liquid phase separation of tau: From molecular biophysics to physiology and disease.

Authors:  Sandeep K Rai; Adriana Savastano; Priyanka Singh; Samrat Mukhopadhyay; Markus Zweckstetter
Journal:  Protein Sci       Date:  2021-05-14       Impact factor: 6.725

8.  Sequence determinants of in cell condensate morphology, dynamics, and oligomerization as measured by number and brightness analysis.

Authors:  Ryan J Emenecker; Alex S Holehouse; Lucia C Strader
Journal:  Cell Commun Signal       Date:  2021-06-05       Impact factor: 5.712

9.  PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.

Authors:  Evelyn Ramberger; Valeria Sapozhnikova; Elisabeth Kowenz-Leutz; Karin Zimmermann; Nathalie Nicot; Petr V Nazarov; Daniel Perez-Hernandez; Ulf Reimer; Philipp Mertins; Gunnar Dittmar; Achim Leutz
Journal:  iScience       Date:  2021-06-04

Review 10.  Nuclear Protein Condensates and Their Properties in Regulation of Gene Expression.

Authors:  Wei Li; Hao Jiang
Journal:  J Mol Biol       Date:  2021-07-14       Impact factor: 6.151

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.