Literature DB >> 33077876

Repeat-sequence turnover shifts fundamentally in species with large genomes.

Petr Novák1, Maïté S Guignard2,3, Pavel Neumann1, Laura J Kelly2,3, Jelena Mlinarec4, Andrea Koblížková1, Steven Dodsworth3,5, Aleš Kovařík6, Jaume Pellicer2,7, Wencai Wang3,8, Jiří Macas9, Ilia J Leitch10, Andrew R Leitch11.   

Abstract

Given the 2,400-fold range of genome sizes (0.06-148.9 Gbp (gigabase pair)) of seed plants (angiosperms and gymnosperms) with a broadly similar gene content (amounting to approximately 0.03 Gbp), the repeat-sequence content of the genome might be expected to increase with genome size, resulting in the largest genomes consisting almost entirely of repetitive sequences. Here we test this prediction, using the same bioinformatic approach for 101 species to ensure consistency in what constitutes a repeat. We reveal a fundamental change in repeat turnover in genomes above around 10 Gbp, such that species with the largest genomes are only about 55% repetitive. Given that genome size influences many plant traits, habits and life strategies, this fundamental shift in repeat dynamics is likely to affect the evolutionary trajectory of species lineages.

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Year:  2020        PMID: 33077876     DOI: 10.1038/s41477-020-00785-x

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  19 in total

1.  Transposable Element Diversity Remains High in Gigantic Genomes.

Authors:  Ava Louise Haley; Rachel Lockridge Mueller
Journal:  J Mol Evol       Date:  2022-06-25       Impact factor: 3.973

2.  Reintegrating Biology Through the Nexus of Energy, Information, and Matter.

Authors:  Kim L Hoke; Sara L Zimmer; Adam B Roddy; Mary Jo Ondrechen; Craig E Williamson; Nicole R Buan
Journal:  Integr Comp Biol       Date:  2022-02-05       Impact factor: 3.392

3.  The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA.

Authors:  Ljudevit Luka Boštjančić; Lena Bonassin; Lucija Anušić; Leona Lovrenčić; Višnja Besendorfer; Ivana Maguire; Frederic Grandjean; Christopher M Austin; Carola Greve; Alexander Ben Hamadou; Jelena Mlinarec
Journal:  Front Genet       Date:  2021-01-21       Impact factor: 4.599

Review 4.  Recent advances in faba bean genetic and genomic tools for crop improvement.

Authors:  Hamid Khazaei; Donal M O'Sullivan; Frederick L Stoddard; Kedar N Adhikari; Jeffrey G Paull; Alan H Schulman; Stig U Andersen; Albert Vandenberg
Journal:  Legum Sci       Date:  2021-02-18

5.  Repeatome-Based Phylogenetics in Pelargonium Section Ciconium (Sweet) Harvey.

Authors:  Floris C Breman; Guangnan Chen; Ronald C Snijder; M Eric Schranz; Freek T Bakker
Journal:  Genome Biol Evol       Date:  2021-12-01       Impact factor: 3.416

6.  A customised target capture sequencing tool for molecular identification of Aloe vera and relatives.

Authors:  Yannick Woudstra; Juan Viruel; Martin Fritzsche; Thomas Bleazard; Ryan Mate; Caroline Howard; Nina Rønsted; Olwen M Grace
Journal:  Sci Rep       Date:  2021-12-21       Impact factor: 4.379

Review 7.  From Genome Sequencing to CRISPR-Based Genome Editing for Climate-Resilient Forest Trees.

Authors:  Hieu Xuan Cao; Giang Thi Ha Vu; Oliver Gailing
Journal:  Int J Mol Sci       Date:  2022-01-16       Impact factor: 5.923

8.  Morphological and Genome-Wide Evidence of Homoploid Hybridisation in Urospermum (Asteraceae).

Authors:  Jaume Pellicer; Manica Balant; Pol Fernández; Roi Rodríguez González; Oriane Hidalgo
Journal:  Plants (Basel)       Date:  2022-01-11

9.  Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs.

Authors:  Tony Heitkam; Luise Schulte; Beatrice Weber; Susan Liedtke; Sarah Breitenbach; Anja Kögler; Kristin Morgenstern; Marie Brückner; Ute Tröber; Heino Wolf; Doris Krabel; Thomas Schmidt
Journal:  Front Genet       Date:  2021-07-12       Impact factor: 4.599

Review 10.  Tracing the Evolution of the Angiosperm Genome from the Cytogenetic Point of View.

Authors:  Natalia Borowska-Zuchowska; Magdalena Senderowicz; Dana Trunova; Bozena Kolano
Journal:  Plants (Basel)       Date:  2022-03-16
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