Literature DB >> 33073985

Structural and Dynamic Insights into Redundant Function of YTHDF Proteins.

Yaozong Li1,2, Rajiv K Bedi1, Elena V Moroz-Omori1, Amedeo Caflisch1.   

Abstract

Three YTH-domain family proteins (YTHDF1, YTHDF2, and YTHDF3) recognize the N6-methyladenosine (m6A) modification of mRNA in cells. However, the redundancy of their cellular functions has been disputed. We investigate their interactions with m6A-containing RNA using X-ray crystallography and molecular dynamics (MD). The new X-ray structures and MD simulations show that the three proteins share identical interactions with the m6A-containing RNA and have similar intrinsic plasticity, thus evidencing the redundant roles of the three proteins in cellular functions.

Entities:  

Year:  2020        PMID: 33073985     DOI: 10.1021/acs.jcim.0c01029

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  8 in total

Review 1.  Epitranscriptomic dynamics in brain development and disease.

Authors:  Andrew M Shafik; Emily G Allen; Peng Jin
Journal:  Mol Psychiatry       Date:  2022-04-26       Impact factor: 15.992

Review 2.  Hidden codes in mRNA: Control of gene expression by m6A.

Authors:  Shino Murakami; Samie R Jaffrey
Journal:  Mol Cell       Date:  2022-06-16       Impact factor: 19.328

3.  Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6-Methyladenosine-Modified RNAs.

Authors:  Mariachiara Micaelli; Andrea Dalle Vedove; Linda Cerofolini; Jacopo Vigna; Denise Sighel; Sara Zaccara; Isabelle Bonomo; Georgios Poulentzas; Emanuele Filiberto Rosatti; Giulia Cazzanelli; Laura Alunno; Romina Belli; Daniele Peroni; Erik Dassi; Shino Murakami; Samie R Jaffrey; Marco Fragai; Ines Mancini; Graziano Lolli; Alessandro Quattrone; Alessandro Provenzani
Journal:  ACS Pharmacol Transl Sci       Date:  2022-09-14

Review 4.  Linking the YTH domain to cancer: the importance of YTH family proteins in epigenetics.

Authors:  Rongkai Shi; Shilong Ying; Yadan Li; Liyuan Zhu; Xian Wang; Hongchuan Jin
Journal:  Cell Death Dis       Date:  2021-04-01       Impact factor: 8.469

Review 5.  RNA N6-Methyladenosine Modifications and Its Roles in Alzheimer's Disease.

Authors:  Runjiao Zhang; Yizhou Zhang; Fangzhen Guo; Sha Li; Huixian Cui
Journal:  Front Cell Neurosci       Date:  2022-03-24       Impact factor: 5.505

Review 6.  YT521-B homology domain family proteins as N6-methyladenosine readers in tumors.

Authors:  Heng Yang; Chengyao Chiang; Qinhong Luo; Chunlan Chen; Junrong Huang; Lizhi Zhu; Duo Zheng
Journal:  Front Genet       Date:  2022-08-09       Impact factor: 4.772

7.  Fragment Ligands of the m6A-RNA Reader YTHDF2.

Authors:  Francesco Nai; Raed Nachawati; František Zálešák; Xiang Wang; Yaozong Li; Amedeo Caflisch
Journal:  ACS Med Chem Lett       Date:  2022-08-17       Impact factor: 4.632

8.  YTHDF2 alleviates cardiac hypertrophy via regulating Myh7 mRNA decoy.

Authors:  Hongfei Xu; Zhen Wang; Miao Chen; Wenting Zhao; Tingting Tao; Liang Ma; Yiming Ni; Weidong Li
Journal:  Cell Biosci       Date:  2021-07-15       Impact factor: 7.133

  8 in total

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