| Literature DB >> 33071924 |
John B Sanderson1, James H Yu1, David D Liu1,2, Daniel Amaya3,4,5, Peter M Lauro1,3,4,5, Anelyssa D'Abreu1,5,6, Umer Akbar1,5,6, Shane Lee3,4,5, Wael F Asaad1,2,3,4,5.
Abstract
Introduction: Parkinson's disease (PD) is a progressive movement disorder characterized by heterogenous motor dysfunction with fluctuations in severity. Objective, short-timescale characterization of this dysfunction is necessary as therapies become increasingly adaptive.Entities:
Keywords: Parkinson's Disease (PD); UPDRS; deep brain stimulation; essential tremor (ET); machine learning; symptom assessment
Year: 2020 PMID: 33071924 PMCID: PMC7530842 DOI: 10.3389/fneur.2020.00886
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Subject characteristics.
| Total | 26 | - | - | 12 | - | - | 0.087 | 20 | - | - | |
| Men | 20 | - | - | - | 5 | - | - | - | 6 | - | - |
| Women | 6 | - | - | - | 7 | - | - | - | 13 | - | - |
| Age | 26 | 69.69 | 8.62 | 12 | 65.83 | 12.99 | 0.084 | 20 | 58.45 | 10.20 | |
| Disease duration | 26 | 7.32 | 5.94 | - | 12 | 13.46 | 14.52 | - | - | - | - |
| Handedness | 26 | - | - | 0.169 | 12 | - | - | 20 | - | - | |
| R-handed | 25 | - | - | - | 9 | - | - | - | 19 | - | - |
| L-handed | 1 | - | - | - | 1 | - | - | - | 1 | - | - |
| Ambidextrous | 0 | - | - | - | 2 | - | - | - | 0 | - | - |
| Last meds | 23 | 4.13 | 4.86 | - | 5 | 17.60 | 14.50 | - | - | - | - |
| Predominant phenotype | 26 | - | - | - | - | - | - | - | - | - | - |
| TD | 12 | - | - | - | - | - | - | - | - | - | - |
| PGID | 11 | - | - | - | - | - | - | - | - | - | - |
| Mixed | 3 | - | - | - | - | - | - | - | - | - | - |
| Total | 8 | - | - | ||||||||
| Men | 5 | - | - | - | |||||||
| Women | 3 | - | - | - | |||||||
| Age | 8 | 60.63 | 7.09 | 0.0501 | |||||||
| Disease duration | 8 | 10.75 | 2.81 | 0.118 | |||||||
| Handedness | 8 | - | - | ||||||||
| R-handed | 8 | - | - | - | |||||||
| L-handed | 0 | - | - | - | |||||||
| Ambidextrous | 0 | - | - | - | |||||||
| Years since implant | 8 | 1.75 | 1.16 | - | |||||||
| Last meds | 8 | 3.44 | 2.09 | 0.574 | |||||||
Significant results in bold. Each PD patient was classified as “Tremor-Dominant” (TD), “Postural Instability/Gait Difficulty” (PGID), or “mixed”.
Equations used to calculate metrics used to train the SVM classifiers.
| Distance | – | |
| Tremor Magnitude | ||
| Vector Error | – | |
| Tracking Angle | – | |
| Slowness | ||
| Speed Difference | – | |
| Excursion Difference | – | |
| Pressure | Mean variance of the force captured by the iPad over the course of each epoch | – |
Supplementary Definitions
Let “target trace” refer to the curve traced out by the target, and let “cursor trace” refer to the curve traced out by the cursor. Given a time , define:
x.
x.
Further, given the ith time (t) bin of , define:
C ≜ (x.
T ≜ (x.
Figure 1Generation of MES using non-redundant metrics. (A,B) For each subject, the distribution for each metric was normalized to the pooled control subject data for that metric. The strength of the association was compared between each pair of normalized metric means across all control subjects (A) and patients with PD (B). Pearson's r2 are shown to indicate the strength of correlation. (C,D) The raw trace data from individual trials (top) of control subjects like h0039IH (C) and patients with PD, like s0156LN (D) were used to calculate the eight metrics. These metrics were then used to generate an SVM classifier model by comparing a single subject to a sampling of pooled control subject data. The distance from each point of patient data to the hyperplane for a given epoch corresponds to the MES, which serves as an aggregate, scalar measure of motor dysfunction across a representative trial (bottom). Here, a Gaussian smoothing function was applied to the MES for visualization purposes.
Figure 2Correlations of MES with MDS-UPDRS-III. (A) Using MDS-UPDRS-III, Spearman's correlation coefficient (red line) and corresponding p-values (blue line) were calculated using percentiles between 0 and 100 of session-wide MES for each patient. Higher percentiles correspond to progressively smaller fractions of higher-valued MES. The dotted line indicates a p-value of 0.05, the selected alpha-level in this analysis. In general, better correlations between MES and MDS-UPDRS were observed when considering patients' epochs of more prominent motor dysfunction; the maximum correlation and lowest p-value occurred at the 96th percentile of MES. (B) MDS-UPDRS-III (Motor Examination subsection) scores plotted with corresponding 96th percentile session-wide MES for 24 patients with PD for which MDS-UPDRS-III scores were available. Strength of association was determined by calculating Spearman's correlation coefficient (ρ = 0.501, p = 0.0125).
Figure 3MES effectively discriminated between movement disorder patients and control subjects. (A,B) The distributions of MES over a session were compared between individual control subjects and (A) patients with PD or (B) patients with ET. Here, unique SVM models were generated for each comparison and the resulting MES for each control subject-patient combination were calculated based on these models. These MES distributions were then compared using a ROC analysis. The AUC for each comparison was then calculated. AUCs for each pair-wise comparison are shown. (C) ROC curves were generated from compiled MES distributions from each subject group. All MES were derived from an SVM comparison of individual subjects within a group with a random sampling of pooled control data. The AUCs were then calculated to quantify the discriminatory ability of each comparison.
Comparison of metric weights between patients with PD and patients with ET.
| VectorErr | 2.317 | 0.211 |
| SpDiff | 1.645 | 0.869 |
| ExDiff | 1.561 | 1.00 |
| TrAngle | 1.569 | 1.00 |
| Slowness | 0.414 | 1.00 |
| Pressure | 0.107 | 1.00 |
Multiple t-test results with correction using the Bonferroni-Dunn method comparing metric weights between patients with PD or ET, each compared to pooled control subject data. Two-tailed p-values are given. Significant results in bold.
Figure 4MES metric weights, particularly tremor, differed between patients that have PD compared to ET. (A) Mann-Whitney U test showed that patients with ET have a significantly higher mean MES on a session-to-session basis than patients with PD (U = 96.0, p = 0.0308). Each point represents the mean MES across a single session for a given patient. (B) For the SVM classifier developed for each patient compared to pooled control subject data, the relative contribution of each of the seven different metrics varied. The left plot shows the metric weights calculated for each patient with PD (gray lines) and the mean metric weights across all patients with PD (purple line). The right plot shows a similar analysis for patients with ET (orange line). (C) Removing the “Tremor” metric from the SVM algorithm reduced the accuracy of the resulting classifier in PD v. pooled control (left, purple) and ET v. pooled control (right, orange) comparisons (Wilcoxon signed-rank tests, test statistics were 13.0 and 0.0, while p-values were 3.656 × 10−4 and 3.346 × 10−3, respectively). (D) Removing the “Tremor” metric from the SVM algorithm reduced the MES generated in PD v. pooled control (left, purple) and ET v. pooled control (right, orange) comparisons (Wilcoxon signed-rank tests, test statistics were 28.0 and 1.0, while p-values were 2.956 × 10−4 and 2.873 × 10−3, respectively).
Figure 5SVM analysis differentiated between DBS states in symptomatic patients. Each patient was tested in both the “DBS On” and “DBS Off” states within the span of 1 h. The order of DBS states tested alternated between patients. (A) Accuracies of a single SVM classifier comparing individual patients in two different stimulation states are compared to accuracies produced using an analogous SVM analysis, but with random label shuffling prior to hyperplane generation (Wilcoxon signed rank test, W = 0.0 and p = 0.0117). (B) Metric weights generated by PD patient-pooled control data SVM comparisons were used to examine the relative contributions of each metric in the two different DBS states. The left polar plot depicts the mean metric weights of patients in the “DBS On” state. and the right plot shows the weights of patients in the “DBS Off” state. In each plot, gray lines represent metric weights for individual patients. A two-way ANOVA analysis of these data showed no significant interaction between the metrics and the different movement disorders (F = 1.966, p = 0.0762).