Literature DB >> 33067272

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR.

Manu Vanaerschot1, Sabrina A Mann1,2, James T Webber1, Jack Kamm1, Sidney M Bell3, John Bell4, Si Noon Hong5, Minh Phuong Nguyen5, Lienna Y Chan1, Karan D Bhatt1, Michelle Tan1, Angela M Detweiler1, Alex Espinosa4, Wesley Wu1, Joshua Batson1, David Dynerman1, Debra A Wadford4, Andreas S Puschnik1, Norma Neff1, Vida Ahyong1, Steve Miller2, Patrick Ayscue1, Cristina M Tato1, Simon Paul5, Amy L Kistler1, Joseph L DeRisi1,2, Emily D Crawford6,2.   

Abstract

Entities:  

Keywords:  COVID-19; PCR; SARS-CoV-2; diagnosis; mutation; polymorphism; sensitivity

Mesh：

Substances：

Year:  2020        PMID： 33067272      PMCID： PMC7771441          DOI： 10.1128/JCM.02369-20

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  34 in total

1.  SARS-CoV-2 E Gene Variant Alters Analytical Sensitivity Characteristics of Viral Detection Using a Commercial Reverse Transcription-PCR Assay.

Authors:  Stephen Tahan; Bijal A Parikh; Lindsay Droit; Meghan A Wallace; Carey-Ann D Burnham; David Wang
Journal:  J Clin Microbiol       Date:  2021-06-18       Impact factor: 5.948

2.  Designing sensitive viral diagnostics with machine learning.

Authors:  Hayden C Metsky; Nicole L Welch; Priya P Pillai; Nicholas J Haradhvala; Laurie Rumker; Sreekar Mantena; Yibin B Zhang; David K Yang; Cheri M Ackerman; Juliane Weller; Paul C Blainey; Cameron Myhrvold; Michael Mitzenmacher; Pardis C Sabeti
Journal:  Nat Biotechnol       Date:  2022-03-03       Impact factor: 68.164

3.  Robust clinical detection of SARS-CoV-2 variants by RT-PCR/MALDI-TOF multitarget approach.

Authors:  Matthew M Hernandez; Radhika Banu; Ana S Gonzalez-Reiche; Adriana van de Guchte; Zenab Khan; Paras Shrestha; Liyong Cao; Feng Chen; Huanzhi Shi; Ayman Hanna; Hala Alshammary; Shelcie Fabre; Angela Amoako; Ajay Obla; Bremy Alburquerque; Luz Helena Patiño; Juan David Ramírez; Robert Sebra; Melissa R Gitman; Michael D Nowak; Carlos Cordon-Cardo; Ted E Schutzbank; Viviana Simon; Harm van Bakel; Emilia Mia Sordillo; Alberto E Paniz-Mondolfi
Journal:  J Med Virol       Date:  2021-12-16       Impact factor: 20.693

4.  Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.

Authors:  Alexander Crits-Christoph; Rose S Kantor; Matthew R Olm; Oscar N Whitney; Basem Al-Shayeb; Yue Clare Lou; Avi Flamholz; Lauren C Kennedy; Hannah Greenwald; Adrian Hinkle; Jonathan Hetzel; Sara Spitzer; Jeffery Koble; Asako Tan; Fred Hyde; Gary Schroth; Scott Kuersten; Jillian F Banfield; Kara L Nelson
Journal:  mBio       Date:  2021-01-19       Impact factor: 7.867

5.  SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia.

Authors:  John Everett; Pascha Hokama; Aoife M Roche; Shantan Reddy; Young Hwang; Lyanna Kessler; Abigail Glascock; Yize Li; Jillian N Whelan; Susan R Weiss; Scott Sherrill-Mix; Kevin McCormick; Samantha A Whiteside; Jevon Graham-Wooten; Layla A Khatib; Ayannah S Fitzgerald; Ronald G Collman; Frederic Bushman
Journal:  mBio       Date:  2021-01-19       Impact factor: 7.867

6.  A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2.

Authors:  Daryl M Gohl; John Garbe; Patrick Grady; Jerry Daniel; Ray H B Watson; Benjamin Auch; Andrew Nelson; Sophia Yohe; Kenneth B Beckman
Journal:  BMC Genomics       Date:  2020-12-04       Impact factor: 3.969

7.  IGI-LuNER: single-well multiplexed RT-qPCR test for SARS-CoV-2.

Authors:  Elizabeth C Stahl; Connor A Tsuchida; Jennifer R Hamilton; Enrique Lin-Shiao; Shana L McDevitt; Erica A Moehle; Lea B Witkowsky; C Kimberly Tsui; Kathleen Pestal; Holly K Gildea; Matthew McElroy; Amanda Keller; Iman Sylvain; Clara Williams; Ariana Hirsh; Alison Ciling; Alexander J Ehrenberg; Fyodor D Urnov; Bradley R Ringeisen; Petros Giannikopoulos; Jennifer A Doudna
Journal:  medRxiv       Date:  2020-12-11

8.  The case for routine screening for SARS-CoV-2 before surgery.

Authors:  Paul Tenenbein; Sheila Riazi; Jennie Johnstone; Shaf Keshavjee; Keyvan Karkouti
Journal:  Can J Anaesth       Date:  2020-06-03       Impact factor: 6.713

9.  Performance Characteristics of a Rapid Severe Acute Respiratory Syndrome Coronavirus 2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco.

Authors:  Genay Pilarowski; Paul Lebel; Sara Sunshine; Jamin Liu; Emily Crawford; Carina Marquez; Luis Rubio; Gabriel Chamie; Jackie Martinez; James Peng; Douglas Black; Wesley Wu; John Pak; Matthew T Laurie; Diane Jones; Steve Miller; Jon Jacobo; Susana Rojas; Susy Rojas; Robert Nakamura; Valerie Tulier-Laiwa; Maya Petersen; Diane V Havlir; Joseph DeRisi
Journal:  J Infect Dis       Date:  2021-04-08       Impact factor: 5.226

10.  Prevalence of a Single-Nucleotide Variant of SARS-CoV-2 in Korea and Its Impact on the Diagnostic Sensitivity of the Xpert Xpress SARS-CoV-2 Assay.

Authors:  Ki Ho Hong; Ji Won In; Jaehyeon Lee; So Yeon Kim; Kyoung Ah Lee; Seunghyun Kim; Yeoungim An; Donggeun Lee; Heungsup Sung; Jae-Seok Kim; Hyukmin Lee
Journal:  Ann Lab Med       Date:  2022-01-01       Impact factor: 3.464
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