Literature DB >> 33059815

[Application of RNA sequencing in clinical diagnosis of Mendelian disease].

Hui Xiao1, Wen-Hao Zhou.   

Abstract

Gene panel and whole exome sequencing are now commonly used to detect Mendelian disease, but the current molecular diagnostic rate of DNA sequencing is only 35%-50%. In recent years, RNA sequencing emerges as a promising diagnostic method. It can detect new pathogenic mutations, and analyze allele-specific expression. This will be helpful to understand the relationship between disease genotype and phenotype, and can complement genome sequencing in order to expand the traditional genomic diagnostic methods of Mendelian disease. RNA sequencing is expected to become a routine tool for diagnosing Mendelian diseases. This article reviews the application of RNA sequencing in the clinical diagnosis of Mendelian disease.

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Year:  2020        PMID: 33059815      PMCID: PMC7568994     

Source DB:  PubMed          Journal:  Zhongguo Dang Dai Er Ke Za Zhi        ISSN: 1008-8830


  43 in total

Review 1.  The Genetic Approach: Next-Generation Sequencing-Based Diagnosis of Congenital and Infantile Myopathies/Muscle Dystrophies.

Authors:  Wolfram Kress; Simone Rost; Konstantin Kolokotronis; Gerhard Meng; Natalie Pluta; Clemens Müller-Reible
Journal:  Neuropediatrics       Date:  2017-05-08       Impact factor: 1.947

2.  Improving genetic diagnosis in Mendelian disease with transcriptome sequencing.

Authors:  Beryl B Cummings; Jamie L Marshall; Taru Tukiainen; Monkol Lek; Sandra Donkervoort; A Reghan Foley; Veronique Bolduc; Leigh B Waddell; Sarah A Sandaradura; Gina L O'Grady; Elicia Estrella; Hemakumar M Reddy; Fengmei Zhao; Ben Weisburd; Konrad J Karczewski; Anne H O'Donnell-Luria; Daniel Birnbaum; Anna Sarkozy; Ying Hu; Hernan Gonorazky; Kristl Claeys; Himanshu Joshi; Adam Bournazos; Emily C Oates; Roula Ghaoui; Mark R Davis; Nigel G Laing; Ana Topf; Peter B Kang; Alan H Beggs; Kathryn N North; Volker Straub; James J Dowling; Francesco Muntoni; Nigel F Clarke; Sandra T Cooper; Carsten G Bönnemann; Daniel G MacArthur
Journal:  Sci Transl Med       Date:  2017-04-19       Impact factor: 17.956

Review 3.  Exome sequencing as a tool for Mendelian disease gene discovery.

Authors:  Michael J Bamshad; Sarah B Ng; Abigail W Bigham; Holly K Tabor; Mary J Emond; Deborah A Nickerson; Jay Shendure
Journal:  Nat Rev Genet       Date:  2011-09-27       Impact factor: 53.242

4.  Clinical utility of RNA sequencing to resolve unusual GNE myopathy with a novel promoter deletion.

Authors:  Samya Chakravorty; Kiera Berger; Dalia Arafat; Babi Ramesh Reddy Nallamilli; Hari Prasanna Subramanian; Soumya Joseph; Mary E Anderson; Kevin P Campbell; Jonathan Glass; Greg Gibson; Madhuri Hegde
Journal:  Muscle Nerve       Date:  2019-04-29       Impact factor: 3.217

Review 5.  The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies.

Authors:  Peter D Stenson; Matthew Mort; Edward V Ball; Katy Evans; Matthew Hayden; Sally Heywood; Michelle Hussain; Andrew D Phillips; David N Cooper
Journal:  Hum Genet       Date:  2017-03-27       Impact factor: 4.132

6.  Variant detection sensitivity and biases in whole genome and exome sequencing.

Authors:  Alison M Meynert; Morad Ansari; David R FitzPatrick; Martin S Taylor
Journal:  BMC Bioinformatics       Date:  2014-07-19       Impact factor: 3.169

7.  The impact of rare variation on gene expression across tissues.

Authors:  Xin Li; Yungil Kim; Emily K Tsang; Joe R Davis; Farhan N Damani; Colby Chiang; Gaelen T Hess; Zachary Zappala; Benjamin J Strober; Alexandra J Scott; Amy Li; Andrea Ganna; Michael C Bassik; Jason D Merker; Ira M Hall; Alexis Battle; Stephen B Montgomery
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

8.  Whole Genome Sequencing Expands Diagnostic Utility and Improves Clinical Management in Pediatric Medicine.

Authors:  Dimitri J Stavropoulos; Daniele Merico; Rebekah Jobling; Sarah Bowdin; Nasim Monfared; Bhooma Thiruvahindrapuram; Thomas Nalpathamkalam; Giovanna Pellecchia; Ryan K C Yuen; Michael J Szego; Robin Z Hayeems; Randi Zlotnik Shaul; Michael Brudno; Marta Girdea; Brendan Frey; Babak Alipanahi; Sohnee Ahmed; Riyana Babul-Hirji; Ramses Badilla Porras; Melissa T Carter; Lauren Chad; Ayeshah Chaudhry; David Chitayat; Soghra Jougheh Doust; Cheryl Cytrynbaum; Lucie Dupuis; Resham Ejaz; Leona Fishman; Andrea Guerin; Bita Hashemi; Mayada Helal; Stacy Hewson; Michal Inbar-Feigenberg; Peter Kannu; Natalya Karp; Raymond Kim; Jonathan Kronick; Eriskay Liston; Heather MacDonald; Saadet Mercimek-Mahmutoglu; Roberto Mendoza-Londono; Enas Nasr; Graeme Nimmo; Nicole Parkinson; Nada Quercia; Julian Raiman; Maian Roifman; Andreas Schulze; Andrea Shugar; Cheryl Shuman; Pierre Sinajon; Komudi Siriwardena; Rosanna Weksberg; Grace Yoon; Chris Carew; Raith Erickson; Richard A Leach; Robert Klein; Peter N Ray; M Stephen Meyn; Stephen W Scherer; Ronald D Cohn; Christian R Marshall
Journal:  NPJ Genom Med       Date:  2016-01-13       Impact factor: 8.617

9.  Pseudoexons provide a mechanism for allele-specific expression of APC in familial adenomatous polyposis.

Authors:  Taina T Nieminen; Walter Pavicic; Noora Porkka; Matti Kankainen; Heikki J Järvinen; Anna Lepistö; Päivi Peltomäki
Journal:  Oncotarget       Date:  2016-10-25

10.  Meta-analysis of the diagnostic and clinical utility of genome and exome sequencing and chromosomal microarray in children with suspected genetic diseases.

Authors:  Michelle M Clark; Zornitza Stark; Lauge Farnaes; Tiong Y Tan; Susan M White; David Dimmock; Stephen F Kingsmore
Journal:  NPJ Genom Med       Date:  2018-07-09       Impact factor: 8.617

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