Literature DB >> 21946919

Exome sequencing as a tool for Mendelian disease gene discovery.

Michael J Bamshad1, Sarah B Ng, Abigail W Bigham, Holly K Tabor, Mary J Emond, Deborah A Nickerson, Jay Shendure.   

Abstract

Exome sequencing - the targeted sequencing of the subset of the human genome that is protein coding - is a powerful and cost-effective new tool for dissecting the genetic basis of diseases and traits that have proved to be intractable to conventional gene-discovery strategies. Over the past 2 years, experimental and analytical approaches relating to exome sequencing have established a rich framework for discovering the genes underlying unsolved Mendelian disorders. Additionally, exome sequencing is being adapted to explore the extent to which rare alleles explain the heritability of complex diseases and health-related traits. These advances also set the stage for applying exome and whole-genome sequencing to facilitate clinical diagnosis and personalized disease-risk profiling.

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Year:  2011        PMID: 21946919     DOI: 10.1038/nrg3031

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  90 in total

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Authors:  Rossa W K Chiu; Y M Dennis Lo
Journal:  Semin Fetal Neonatal Med       Date:  2010-11-12       Impact factor: 3.926

2.  Confirmation by exome sequencing of the pathogenic role of NCSTN mutations in acne inversa (hidradenitis suppurativa).

Authors:  Yuan Liu; Min Gao; Yong-mei Lv; Xu Yang; Yun-qing Ren; Tao Jiang; Xin Zhang; Bi-rong Guo; Min Li; Qing Zhang; Peng Zhang; Fu-sheng Zhou; Gang Chen; Xian-yong Yin; Xian-bo Zuo; Liang-dan Sun; Xiao-dong Zheng; Shu-mei Zhang; Jian-jun Liu; Youwen Zhou; Ying-rui Li; Jun Wang; Jian Wang; Huan-ming Yang; Sen Yang; Rui-qiang Li; Xue-jun Zhang
Journal:  J Invest Dermatol       Date:  2011-03-24       Impact factor: 8.551

3.  Genome-wide studies of copy number variation and exome sequencing identify rare variants in BAG3 as a cause of dilated cardiomyopathy.

Authors:  Nadine Norton; Duanxiang Li; Mark J Rieder; Jill D Siegfried; Evadnie Rampersaud; Stephan Züchner; Steve Mangos; Jorge Gonzalez-Quintana; Libin Wang; Sean McGee; Jochen Reiser; Eden Martin; Deborah A Nickerson; Ray E Hershberger
Journal:  Am J Hum Genet       Date:  2011-02-25       Impact factor: 11.025

4.  Exome capture and massively parallel sequencing identifies a novel HPSE2 mutation in a Saudi Arabian child with Ochoa (urofacial) syndrome.

Authors:  Wisam Al Badr; Suha Al Bader; Edgar Otto; Friedhelm Hildebrandt; Todd Ackley; Weiping Peng; Jishu Xu; Jun Li; Kailey M Owens; David Bloom; Jeffrey W Innis
Journal:  J Pediatr Urol       Date:  2011-03-29       Impact factor: 1.830

5.  Whole-exome sequencing links a variant in DHDDS to retinitis pigmentosa.

Authors:  Stephan Züchner; Julia Dallman; Rong Wen; Gary Beecham; Adam Naj; Amjad Farooq; Martin A Kohli; Patrice L Whitehead; William Hulme; Ioanna Konidari; Yvonne J K Edwards; Guiqing Cai; Inga Peter; David Seo; Joseph D Buxbaum; Jonathan L Haines; Susan Blanton; Juan Young; Eduardo Alfonso; Jeffery M Vance; Byron L Lam; Margaret A Peričak-Vance
Journal:  Am J Hum Genet       Date:  2011-02-03       Impact factor: 11.025

6.  How to catch all those mutations--the report of the third Human Variome Project Meeting, UNESCO Paris, May 2010.

Authors:  Maija R J Kohonen-Corish; Jumana Y Al-Aama; Arleen D Auerbach; Myles Axton; Carol Isaacson Barash; Inge Bernstein; Christophe Béroud; John Burn; Fiona Cunningham; Garry R Cutting; Johan T den Dunnen; Marc S Greenblatt; Jim Kaput; Michael Katz; Annika Lindblom; Finlay Macrae; Donna Maglott; Gabriela Möslein; Sue Povey; Raj Ramesar; Sue Richards; Daniela Seminara; María-Jesús Sobrido; Sean Tavtigian; Graham Taylor; Mauno Vihinen; Ingrid Winship; Richard G H Cotton
Journal:  Hum Mutat       Date:  2010-12       Impact factor: 4.878

7.  Whole-exome-sequencing-based discovery of human FADD deficiency.

Authors:  Alexandre Bolze; Minji Byun; David McDonald; Neil V Morgan; Avinash Abhyankar; Lakshmanane Premkumar; Anne Puel; Chris M Bacon; Frédéric Rieux-Laucat; Ki Pang; Alison Britland; Laurent Abel; Andrew Cant; Eamonn R Maher; Stefan J Riedl; Sophie Hambleton; Jean-Laurent Casanova
Journal:  Am J Hum Genet       Date:  2010-11-25       Impact factor: 11.025

Review 8.  Investigation of Mendelian forms of obesity holds out the prospect of personalized medicine.

Authors:  Alexandra I F Blakemore; Philippe Froguel
Journal:  Ann N Y Acad Sci       Date:  2010-12       Impact factor: 5.691

9.  An evaluation of statistical approaches to rare variant analysis in genetic association studies.

Authors:  Andrew P Morris; Eleftheria Zeggini
Journal:  Genet Epidemiol       Date:  2010-02       Impact factor: 2.135

10.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.

Authors:  Brian J O'Roak; Pelagia Deriziotis; Choli Lee; Laura Vives; Jerrod J Schwartz; Santhosh Girirajan; Emre Karakoc; Alexandra P Mackenzie; Sarah B Ng; Carl Baker; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Simon E Fisher; Jay Shendure; Evan E Eichler
Journal:  Nat Genet       Date:  2011-05-15       Impact factor: 38.330

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  717 in total

1.  How Can Next-Generation Sequencing (Genomics) Help Us in Treating Colorectal Cancer?

Authors:  Kristen K Ciombor; Sigurdis Haraldsdottir; Richard M Goldberg
Journal:  Curr Colorectal Cancer Rep       Date:  2014-12-01

Review 2.  Genome-wide association studies of chronic kidney disease: what have we learned?

Authors:  Conall M O'Seaghdha; Caroline S Fox
Journal:  Nat Rev Nephrol       Date:  2011-12-06       Impact factor: 28.314

Review 3.  Biomedical impact of splicing mutations revealed through exome sequencing.

Authors:  Bahar Taneri; Esra Asilmaz; Terry Gaasterland
Journal:  Mol Med       Date:  2012-03-30       Impact factor: 6.354

4.  A new look at vitamin D metabolism and "idiopathic" hypercalcemia.

Authors:  William F Simonds
Journal:  J Clin Endocrinol Metab       Date:  2012-02       Impact factor: 5.958

5.  Human disease: Huge boost for genetics of cognitive disorders.

Authors:  Tanita Casci
Journal:  Nat Rev Genet       Date:  2011-09-27       Impact factor: 53.242

Review 6.  To tell or not to tell? A systematic review of ethical reflections on incidental findings arising in genetics contexts.

Authors:  Gabrielle M Christenhusz; Koenraad Devriendt; Kris Dierickx
Journal:  Eur J Hum Genet       Date:  2012-06-27       Impact factor: 4.246

7.  LPS-responsive beige-like anchor (LRBA) gene mutation in a family with inflammatory bowel disease and combined immunodeficiency.

Authors:  Abdullah Alangari; Abdulrahman Alsultan; Nouran Adly; Michel J Massaad; Iram Shakir Kiani; Abdulrahman Aljebreen; Emad Raddaoui; Abdul-Kareem Almomen; Saleh Al-Muhsen; Raif S Geha; Fowzan S Alkuraya
Journal:  J Allergy Clin Immunol       Date:  2012-06-19       Impact factor: 10.793

8.  Functional Dysregulation of CDC42 Causes Diverse Developmental Phenotypes.

Authors:  Simone Martinelli; Oliver H F Krumbach; Francesca Pantaleoni; Simona Coppola; Ehsan Amin; Luca Pannone; Kazem Nouri; Luciapia Farina; Radovan Dvorsky; Francesca Lepri; Marcel Buchholzer; Raphael Konopatzki; Laurence Walsh; Katelyn Payne; Mary Ella Pierpont; Samantha Schrier Vergano; Katherine G Langley; Douglas Larsen; Kelly D Farwell; Sha Tang; Cameron Mroske; Ivan Gallotta; Elia Di Schiavi; Matteo Della Monica; Licia Lugli; Cesare Rossi; Marco Seri; Guido Cocchi; Lindsay Henderson; Berivan Baskin; Mariëlle Alders; Roberto Mendoza-Londono; Lucie Dupuis; Deborah A Nickerson; Jessica X Chong; Naomi Meeks; Kathleen Brown; Tahnee Causey; Megan T Cho; Stephanie Demuth; Maria Cristina Digilio; Bruce D Gelb; Michael J Bamshad; Martin Zenker; Mohammad Reza Ahmadian; Raoul C Hennekam; Marco Tartaglia; Ghayda M Mirzaa
Journal:  Am J Hum Genet       Date:  2018-01-25       Impact factor: 11.025

9.  Personalized sequencing and the future of medicine: discovery, diagnosis and defeat of disease.

Authors:  Edward D Esplin; Ling Oei; Michael P Snyder
Journal:  Pharmacogenomics       Date:  2014-11       Impact factor: 2.533

10.  Diagnostic utility of whole exome sequencing in patients showing cerebellar and/or vermis atrophy in childhood.

Authors:  Chihiro Ohba; Hitoshi Osaka; Mizue Iai; Sumimasa Yamashita; Yume Suzuki; Noriko Aida; Nobuyuki Shimozawa; Ayumi Takamura; Hiroshi Doi; Atsuko Tomita-Katsumoto; Kiyomi Nishiyama; Yoshinori Tsurusaki; Mitsuko Nakashima; Noriko Miyake; Yoshikatsu Eto; Fumiaki Tanaka; Naomichi Matsumoto; Hirotomo Saitsu
Journal:  Neurogenetics       Date:  2013-10-04       Impact factor: 2.660

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