Literature DB >> 33058268

Boronic Acid-Mediated Activity Control of Split 10-23 DNAzymes.

Mégane Debiais1, Amandine Lelievre2, Jean-Jacques Vasseur1, Sabine Müller2, Michael Smietana1.   

Abstract

The 10-23 DNAzyme is an artificially developed Mg2+ -dependent catalytic oligonucleotide that can cleave an RNA substrate in a sequence-specific fashion. In this study, new split 10-23 DNAzymes made of two nonfunctional fragments, one of which carries a boronic acid group at its 5' end, while the other has a ribonucleotide at its 3' end, were designed. Herein it is demonstrated that the addition of Mg2+ ions leads to assembly of the fragments, which in turn induces the formation of a new boronate internucleoside linkage that restores the DNAzyme activity. A systematic evaluation identified the best-performing system. The results highlight key features for efficient control of DNAzyme activity through the formation of boronate linkages.
© 2020 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.

Entities:  

Keywords:  DNA; RNA; autoligation; boronic acids; oligonucleotides

Mesh:

Substances:

Year:  2020        PMID: 33058268      PMCID: PMC7839725          DOI: 10.1002/chem.202004227

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.020


  40 in total

1.  Probing the function of nucleotides in the catalytic cores of the 8-17 and 10-23 DNAzymes by abasic nucleotide and C3 spacer substitutions.

Authors:  Bin Wang; Liqiang Cao; William Chiuman; Yingfu Li; Zhen Xi
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

2.  Mechanism and utility of an RNA-cleaving DNA enzyme.

Authors:  S W Santoro; G F Joyce
Journal:  Biochemistry       Date:  1998-09-22       Impact factor: 3.162

3.  Influence of conformationally restricted pyrimidines on the activity of 10-23 DNAzymes.

Authors:  Laura Robaldo; Franco Izzo; María Dellafiore; Cecilia Proietti; Patricia V Elizalde; Javier M Montserrat; Adolfo M Iribarren
Journal:  Bioorg Med Chem       Date:  2012-02-28       Impact factor: 3.641

4.  Studies on the preferred uracil-adenine base pair at the cleavage site of 10-23 DNAzyme by functional group modifications on adenine.

Authors:  Junfei Zhu; Zhiwen Li; Zhenjun Yang; Junlin He
Journal:  Bioorg Med Chem       Date:  2015-06-23       Impact factor: 3.641

5.  Development of Visible-Light-Responsive RNA Scissors Based on a 10-23 DNAzyme.

Authors:  Yukiko Kamiya; Yu Arimura; Hideaki Ooi; Kenjiro Kato; Xing-Guo Liang; Hiroyuki Asanuma
Journal:  Chembiochem       Date:  2018-05-30       Impact factor: 3.164

6.  Boronic acid building blocks: tools for self assembly.

Authors:  Ryuhei Nishiyabu; Yuji Kubo; Tony D James; John S Fossey
Journal:  Chem Commun (Camb)       Date:  2010-11-29       Impact factor: 6.222

7.  Mismatch Discrimination and Efficient Photomodulation with Split 10-23 DNAzymes.

Authors:  Brittani K Ruble; Julia L Richards; Jasmina C Cheung-Lau; Ivan J Dmochowski
Journal:  Inorganica Chim Acta       Date:  2012-01-15       Impact factor: 2.545

Review 8.  Boronic acid-based enzyme inhibitors: a review of recent progress.

Authors:  H Fu; H Fang; Jie Sun; H Wang; A Liu; J Sun; Z Wu
Journal:  Curr Med Chem       Date:  2014       Impact factor: 4.530

9.  Expanding the borononucleotide family: synthesis of borono-analogues of dCMP, dGMP and dAMP.

Authors:  Anthony R Martin; Kishor Mohanan; Delphine Luvino; Nicolas Floquet; Carine Baraguey; Michael Smietana; Jean-Jacques Vasseur
Journal:  Org Biomol Chem       Date:  2009-08-27       Impact factor: 3.876

10.  The contribution of adenines in the catalytic core of 10-23 DNAzyme improved by the 6-amino group modifications.

Authors:  Junfei Zhu; Zhiwen Li; Qi Wang; Yang Liu; Junlin He
Journal:  Bioorg Med Chem Lett       Date:  2016-07-30       Impact factor: 2.823

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