Literature DB >> 33054902

Sphingobacterium chungjuense sp. nov., isolated from a freshwater lake.

Jaeho Song1, Yochan Joung1, Shan-Hui Li1, Juchan Hwang1, Jang-Cheon Cho.   

Abstract

A Gram-stain-negative, rod-shaped, aerobic, non-flagellated, chemoheterotrophic bacterium, designated strain IMCC25678T, was isolated from an artificial freshwater reservoir, Chungju Lake, in the Republic of Korea. The 16S rRNA gene sequence analysis indicated that strain IMCC25678T belongs to the genus Sphingobacterium with ≤98.7 % sequence similarities to Sphingobacterium species. Whole genome sequencing of strain IMCC25678T revealed a 3.9 Mbp genome size with a DNA G+C content of 42.2 mol%. The IMCC25678T genome shared ≤89.7 % average nucleotide identity and ≤21.4 % digital DNA-DNA hybridization values with closely related species of the genus Sphingobacterium, indicating that the strain represents a novel species. Summed feature 3 (C16 : 1  ω6c and/or C16 : 1  ω7c), iso-C15 : 0 and iso-C17 : 0 3-OH were found to be the predominant cellular fatty acid constituents in the strain. The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine, one unidentified phosphoglycolipid, one unidentified sphingolipid and three unidentified polar lipids. Based on the phylogenetic and phenotypic characteristics, strain IMCC25678T was considered to represent a novel species within the genus Sphingobacterium, for which the name Sphingobacterium chungjuense sp. nov. is proposed. The type strain is IMCC25678T (=KACC 19485T=NBRC 113130T).

Entities:  

Keywords:  Sphingobacterium; Sphingobacterium chungjuense; freshwater; genome; novel species; taxonomy

Mesh:

Substances:

Year:  2020        PMID: 33054902     DOI: 10.1099/ijsem.0.004507

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  3 in total

1.  Sphingobacterium bovistauri sp. nov., Isolated from the Faeces of Bos Taurus.

Authors:  Qiong Wang; Zhi-Qin Fang; Chen-Lu Zhang; Jian-Qiang Shen; Jian-Dong Lai; Xiu-Lin Han; Tao Lu
Journal:  Curr Microbiol       Date:  2022-02-07       Impact factor: 2.188

2.  Sphingobacterium rhinopitheci sp. Nov., isolated from the faeces of Rhinopithecus bieti in China.

Authors:  Xiu-Lin Han; Qiong Wang; Chen-Lu Zhang; Zhi-Qin Fang; Jian-Qiang Shen; Song Huang; Tao Lu
Journal:  Arch Microbiol       Date:  2021-06-24       Impact factor: 2.552

3.  Assessment of Chlorella sorokiniana Growth in Anaerobic Digester Effluent.

Authors:  Elvira E Ziganshina; Svetlana S Bulynina; Ayrat M Ziganshin
Journal:  Plants (Basel)       Date:  2021-03-03
  3 in total

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