Literature DB >> 33051443

GalliForm, a database of Galliformes occurrence records from the Indo-Malay and Palaearctic, 1800-2008.

Elizabeth H Boakes1, Richard A Fuller2, Georgina M Mace3, Changqing Ding4, Tzo Tze Ang5, Alistair G Auffret5,6, Natalie E Clark5,7, Jonathon Dunn8, Jennifer Gilbert5, Viktor Golovnyuk9, Garima Gupta8, Ulrike Irlich5,10, Emily Joachim5, Kim O' Connor5, Eugene Potapov11, Roald Potapov12, Judith Schleicher5,13, Sarah Stebbing5, Terry Townshend14, Philip J K McGowan8.   

Abstract

Historical as well as current species distribution data are needed to track changes in biodiversity. Species distribution data are found in a variety of sources, each of which has its own distinct bias toward certain taxa, time periods or places. We present GalliForm, a database that comprises 186687 galliform occurrence records linked to 118907 localities in Europe and Asia. Records were derived from museums, peer-reviewed and grey literature, unpublished field notes, diaries and correspondence, banding records, atlas records and online birding trip reports. We describe data collection processes, georeferencing methods and quality-control procedures. This database has underpinned several peer-reviewed studies, investigating spatial and temporal bias in biodiversity data, species' geographic range changes and local extirpation patterns. In our rapidly changing world, an understanding of long-term change in species' distributions is key to predicting future impacts of threatening processes such as land use change, over-exploitation of species and climate change. This database, its historical aspect in particular, provides a valuable source of information for further studies in macroecology and biodiversity conservation.

Entities:  

Mesh:

Year:  2020        PMID: 33051443      PMCID: PMC7553924          DOI: 10.1038/s41597-020-00690-0

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


Background & Summary

Gathering primary biodiversity data is necessary to improve our knowledge of the ecology and conservation status of species. International commitments such as the Convention on Biological Diversity[1] call for a halt to biodiversity loss and therefore require data to measure biodiversity change. Recent trends in changes in population sizes or geographical ranges can be used to track progress toward biodiversity targets but longer-term trends are needed if we are to put the status of present-day biota into a proper historical context[2,3]. Similarly, if we are to understand the impacts of climate and land use change on species distributions, historical data are required. Ideally, this biodiversity information must be comprehensive, covering common species as well as threatened, and areas of lower biodiversity as well as hotspots. Our knowledge of species’ distributions is extremely coarse compared to most other environmental variables[4]. Analyses of species’ geographical ranges often rely on predictions of where a species might occur. Predictions might be gleaned from expert opinion (e.g. https://birdsoftheworld.org/bow/home) (and in some instances may be influenced by historical data), the extent of suitable habitat[5], gridded survey data[6] or point occurrences[7]. Prominent conservation datasets such as the Living Planet Index[8] and IUCN’s species distribution maps (https://www.iucnredlist.org/resources/spatial-data-download) are regularly used to assess rates of biodiversity loss but these data sources do not extend back beyond around 1970. Longer-term trends can reveal major shifts in abundance and composition of biological communities, information that should be considered when setting conservation targets[9]. While aggregated population trends or extent of occurrence maps are useful conservation tools, primary data allow us to investigate biodiversity loss in far greater detail. For example, if species’ ranges are punctuated with local extinction events we might overlook or underestimate species’ declines because we lack the precision to measure them[10]. Additionally, data summaries may be at coarser resolutions than the original data or missing attributes attached to the original record. Freely available primary data allow new questions to be investigated, for which data summaries might not be suitable. The avian order Galliformes has relatively high quality historical distribution data. This is in part due to their economic and cultural value and their attraction for collectors and ornithologists[11]. Almost all species are non-migratory, making delimitation of their current and historical ranges more tractable. In recent times they have received much conservation attention through being one of the most threatened avian orders – over 25% of species are threatened (www.iucnredlist.org) and many local extinctions have been reported[12] (http://datazone.birdlife.org/home). Galliformes are subject to a variety of threats including habitat loss, hunting, and agricultural intensification and disturbance (http://datazone.birdlife.org/home). The order exhibits a wide range of ecological characteristics and life history traits, and occurs in a diversity of habitats, meaning that the Galliformes lend themselves well to macroecological studies[13]. Here we present GalliForm[14], a database of 186687 occurrence records covering the 130 species of the avian order Galliformes that occur in the Palaearctic and Indo-Malay biogeographic realms (see Fig. 1 for spatial distribution of records). Records cover the period 1648 to 2008 although 95% of records date from 1877 onwards. Records increase markedly though time (Fig. 2). Records were collected from museums, peer-reviewed and grey literature, bird atlases, banding records and birding trip report websites (see[15] for spatial biases within sources). Where possible, data were informally refereed by local experts who, if necessary, supplemented the data with their personal records. Each data source was found to have a distinct set of spatial, temporal and taxonomic biases[15]. Combining biodiversity data from a variety of primary sources helps to minimise data bias.
Fig. 1

The spatial distribution of those records in GalliForm that contain sufficient information to be georeferenced to an accuracy of 30 minutes. The records of Lagopus lagopus and Lagopus muta from North America are omitted.

Fig. 2

The cumulative number of occurrence records through time. The number of occurrence records has been converted to a natural logarithmic scale.

The spatial distribution of those records in GalliForm that contain sufficient information to be georeferenced to an accuracy of 30 minutes. The records of Lagopus lagopus and Lagopus muta from North America are omitted. The cumulative number of occurrence records through time. The number of occurrence records has been converted to a natural logarithmic scale. The GalliForm dataset[14] is an extremely valuable resource for ecological and conservation studies. Occurrence data underpin species distribution modelling but geographic ranges are changing rapidly due to the diverse impacts caused by human activities. Historical occurrence data, coupled with climate and land-use data, may improve our understanding of populations’ responses to climate change, land-use change and hunting. The species occurrence data described here have been used to assess the completeness of geographic range size estimates[16], to investigate patterns of range collapse with respect to distance to range edge[17] and to assess species extirpations outside Protected Areas[12]. Nine publications[10,12,15-21] have so far arisen from this database but many avenues remain to be explored.

Methods

These methods are an expanded version of those in our related work, Boakes et al.[15]. The database was compiled over the period 2005–2008. Data collection equates to around 1500 person-days and data were gathered by a team of 21 people. Between them, team members were fluent in English, French, German, Mandarin, Russian, Spanish and Swedish. These languages were extremely helpful in transcribing museum specimen labels and in translating publications. However, the majority of publications were in English and we acknowledge that the database will be biased toward records published in English-language publications. Our study focuses on the 130 galliform species that occur within the Palaearctic and Indo-Malay biogeographic realms[22] (see Online-only Table 1). We have additionally included records of the Imperial Pheasant (Lophura imperialis) although it is now recognised that this is a hybrid and not a species. The geographic range of two of the species in the database, the Red Grouse (Lagopus lagopus) and the Rock Ptarmigan (Lagopus muta), extends to North America. North American data was often included in the information which museums sent us and in these instances we entered those records into the database since we thought they might be of use to researchers studying these species. However, it should be noted that we did not search exhaustively for records of these species in North America, we have merely included those that we came across.
Online-only Table 1

Summary of records of each species in GalliForm. Species taxonomy is that accepted by the IUCN and BirdLife.

SpeciesCommon nameNumber of recordsNumber of localities in which recordedYear of earliest recordYear of most recent record
Alectoris barbaraBarbary Partridge71532818212007
Alectoris chukarChukar2992170218302007
Alectoris graecaRock Partridge105871318202006
Alectoris magnaPrzewalski’s Partridge1127618722007
Alectoris melanocephalaArabian Chukar19314918522006
Alectoris philbyiPhilby’s Rock Partridge753218451998
Alectoris rufaRed-legged Partridge5683432018172007
Ammoperdix griseogularisSee-see Partridge69438118362006
Ammoperdix heyiSand Partridge53426418202006
Arborophila ardensHainan Hill-partridge1085418912005
Arborophila atrogularisWhite-cheeked Hill-partridge25413318032007
Arborophila brunneopectusBrown-breasted Hill-partridge47924318732006
Arborophila cambodianaCambodian Hill-partridge663619272006
Arborophila campbelliMalaysian Hill-partridge382219072000
Arborophila charltoniiChestnut-necklaced Hill-partridge854818961994
Arborophila chloropusScaly-breasted Hill-partridge47725318732007
Arborophila crudigularisTaiwan Hill-partridge1577418642007
Arborophila davidiOrange-necked Hill-partridge422819252006
Arborophila gingicaCollared Hill-partridge1168618992004
Arborophila graydoniSabah Hill-partridge1025218332001
Arborophila hyperythraBornean Hill-partridge1174318872001
Arborophila javanicaJavan Hill-partridge2345618262002
Arborophila mandeliiChestnut-breasted Hill-partridge1047318762007
Arborophila orientalisGrey-breasted Hill-partridge651418961989
Arborophila rolliTan-breasted Hill-partridge271518982000
Arborophila rubrirostsrisRed-billed Hill-partridge1073318782001
Arborophila rufipectusSichuan Hill-partridge1338219212007
Arborophila rufogularisRufous-throated Hill-partridge94643318472007
Arborophila sumatranaSumatran Hill-partridge311818261939
Arborophila tonkinensisTonkin Hill-partridge491619252006
Arborophila torqueolaNecklaced Hill-partridge71235018412007
Argusianus argusGreat Argus70634218362004
Bambusicola fytchiiMountain Bamboo-partridge44721518762007
Bambusicola sonorivoxTaiwan Bamboo-partridge2328518612007
Bambusicola thoracicusChinese Bamboo-partridge101086718612007
Bonasa bonasiaHazel Grouse6004422618152007
Bonasa sewerzowiSevertzov’s Grouse30019418732007
Caloperdix oculeusFerruginous Partridge20111318602004
Catreus wallichiiCheer Pheasant91343618202007
Chrysolophus amherstiaeLady Amherst’s Pheasant41426018692007
Chrysolophus pictusGolden Pheasant49435718632007
Coturnix coromandelicaBlack-breasted Quail49426118292006
Coturnix coturnixCommon Quail14805996218102007
Coturnix japonicaJapanese Quail102253118372007
Crossoptilon auritumBlue Eared-pheasant25113918692007
Crossoptilon crossoptilonWhite Eared-pheasant34219618902007
Crossoptilon harmaniTibetan Eared-pheasant1609618802007
Crossoptilon mantchuricumBrown Eared-pheasant27416418662005
Falcipennis falcipennisSiberian Spruce Grouse16211618401994
Francolinus francolinusBlack Francolin172480318192007
Francolinus gularisSwamp Partridge44323418462007
Francolinus pictusPainted Francolin27716118452001
Francolinus pintadeanusChinese Francolin80252117882007
Francolinus pondicerianusGrey Francolin96257618292007
Galloperdix bicalcarataSri Lanka Spurfowl1686118652006
Galloperdix lunulataPainted Spurfowl1739118322007
Galloperdix spadiceaRed Spurfowl38919718142007
Gallus gallusRed Junglefowl2706152418012007
Gallus lafayettiiSri Lanka Junglefowl46616818272006
Gallus sonneratiiGrey Junglefowl43523416602007
Gallus variusGreen Junglefowl27111818202004
Haematortyx sanguinicepsCrimson-headed Partridge1025218932001
Ithaginis cruentusBlood Pheasant145668018452007
Lagopus lagopusRed Grouse11545662517502007
Lagopus mutaRock Ptarmigan5280236618002006
Lerwa lerwaSnow Partridge38721818222007
Lophophorus impejanusHimalayan Monal105563116482007
Lophophorus lhuysiiChinese Monal21011418692006
Lophophorus sclateriSclater’s Monal29417118792007
Lophura bulweriBulwer’s Pheasant20214018742001
Lophura diardiSiamese Fireback34217918192007
Lophura edwardsiEdward’s Pheasant1085919222000
Lophura erythrophthalmaMalay Crestless Fireback1216818181998
Lophura ignitaBornean Crested Fireback32115318362003
Lophura imperialisImperial Pheasant342619232000
Lophura inornataSalvadori’s Pheasant1225018782005
Lophura leucomelanosKalij Pheasant186196718362007
Lophura nycthemeraSilver Pheasant122170418412007
Lophura pyronotaBornean Crestless Fireback1196218431999
Lophura rufaMalay Crested Fireback25110218072004
Lophura swinhoiiSwinhoe’s Pheasant2329718632007
Lyrurus mlokosiewicziCaucasian Grouse34019218662006
Lyrurus tetrixBlack Grouse11915682918192007
Megapodius cumingiiPhilippine Megapode1066818662006
Megapodius nicobariensisNicobar Megapode1164518601998
Melanoperdix nigerBlack Wood Partridge20910218261991
Ophrysia superciliosaHimalayan Quail482918651989
Pavo cristatusCommon Peafowl72648418512007
Pavo muticusGreen Peafowl106562018282007
Perdicula argoondahRock Bush Quail22810518362007
Perdicula asiaticaJungle Bush Quail66529818392007
Perdicula erythrorhynchaPainted Bush Quail1978118402007
Perdicula manipurensisManipur Bush Quail803818812006
Perdix dauuricaDaurian Partridge88351318552007
Perdix hodgsoniaeTibetan Partridge57832118502007
Perdix perdixGrey Partridge324252987717272007
Phasianus colchicusCommon Pheasant404513645617832007
Phasianus versicolorGreen Pheasant1978118452006
Polyplectron bicalcaratumGrey Peacock-pheasant73343518382007
Polyplectron chalcurumSumatran Peacock-pheasant1295618482004
Polyplectron germainiGermain’s Peacock-pheasant1167418802007
Polyplectron inopinatumMountain Peacock-pheasant733619022008
Polyplectron katsumataeHainan Peacock-pheasant553419052004
Polyplectron malacenseMalayan Peacock-pheasant1325818512003
Polyplectron napoleonisPalawan Peacock-pheasant1925918312005
Polyplectron schleiermacheriBornean Peacock-pheasant784918882003
Pucrasia macrolophaKoklass Pheasant114568118252007
Rheinardia ocellataCrested Argus21610118862003
Rhizothera dulitensisDulit Partridge11718941902
Rhizothera longirostrisLong-billed Wood Partridge16210018182003
Rollulus rouloulCrested Partridge80532918062004
Synoicus chinensisKing Quail118554618392007
Syrmaticus elliotiElliot’s Pheasant41527818712006
Syrmaticus humiaeMrs Hume’s Pheasant47324418402004
Syrmaticus mikadoMikado Pheasant1065618972007
Syrmaticus reevesiiReeves’ Pheasant42624918392002
Syrmaticus soemmerringiiCopper Pheasant47832118332004
Tetrao urogalloidesBlack-billed Capercaillie36924418282004
Tetrao urogallusWestern Capercaillie5736383018162007
Tetraogallus altaicusAltai Snowcock1537218342004
Tetraogallus caspiusCaspian Snowcock1378318692007
Tetraogallus caucasicusCaucasian Snowcock1669618401994
Tetraogallus himalayensisHimalayan Snowcock72041718412006
Tetraogallus tibetanusTibetan Snowcock50732318702007
Tetraophasis obscurusVerreaux’s Monal Partridge1419718692007
Tetraophasis szechenyiiSzechenyi’s Monal Partridge22013318922007
Tragopan blythiiBlyth’s Tragopan38918718382007
Tragopan cabotiCabot’s Tragopan30514418682004
Tragopan melanocephalusWestern Tragopan76642918412006
Tragopan satyraSatyr Tragopan52729818452007
Tragopan temminckiiTemminck’s Tragopan57736818692007
We attempted to gather all species distribution data that could be accessed from five different sources; museum collections, literature records, banding (ringing) data, ornithological atlases and birdwatchers’ trip report websites. For each data source, exhaustive and systematic search strategies were adopted.

Museum collections

Using web-based searches and Roselaar[23], 377 natural history collections were identified. We found contact details for 338 of these collections and requested by email or letter a list of the Galliformes in their holdings along with collection localities and dates. Non-respondents were recontacted. 135 museums were able to share data with us (see Online-only Table 2). Museum records were obtained through publicly available online databases e.g. ORNIS, electronic or paper catalogues sent to us by the museums or by visiting the museums and transcribing data directly from specimens or card catalogues. Almost half of the museums we contacted did not respond despite at least one follow-up enquiry, and there was substantial variation in the amount and format of data contributed by those that did reply. Altogether, over 50% of the records came from just six museums (Natural History Museum, London; Zoological Institute of the Russian Academy of Sciences, St Petersburg; Zoological Museum of Lomonosov Moscow State University; Field Museum of Natural History, Chicago; American Museum of Natural History, New York; National Museum of Natural History, Leiden), a single museum (the Natural History Museum, London) contributing nearly 20% of the museum records that could be georeferenced and dated[15]. Following databasing and/or georeferencing, records were returned to larger collections and to those who had requested the data.
Online-only Table 2

The museums that shared data with GalliForm.

MuseumCountry
Australian National Wildlife Collection, CSIRO, AustraliaAustralia
Museum Victoria, Melbourne, AustraliaAustralia
South Australian MuseumAustralia
Biologie Zentrum des Oberostereichisches Landesmuseums, Linz, AustriaAustria
Natural History Musuem, Vienna, AustriaAustria
Institut Royal des Sciences Naturelles de Belgique, BelgiumBelgium
Plodiv Natural Science Museum, BulgariaBulgaria
Ruse Natural History Museum, BulgariaBulgaria
Canadian Museum of NatureCanada
Royal Alberta Museum, CanadaCanada
Beijing Institute of Zoology, ChinaChina
Nature Museum of Sichuan University, ChinaChina
Normal University of Xihuan, ChinaChina
Muzeum J A Komenskeho, Prerov, Czech RepublicCzech Republic
Vlastivedne Muzeum v Olomouci, Czech RepublicCzech Republic
Naturhistoriska Museum, Aarhus, DenmarkDenmark
University of Copenhagen Museum of Zoology, DenmarkDenmark
Chelmsford Museum, Essex, UKUK
Zooloogia Muuseum, Tartu, EstoniaEstonia
Musee Guimet d’Histoire Naturelle, FranceFrance
Musee Zoologique de l’Universite Louis Pasteur et de la Ville de Strasbourg, FranceFrance
Museum d’Histoire Naturelle de Grenoble, FranceFrance
Museum d’Histoire Naturelle de Bordeaux, FranceFrance
Museum National d’Histoire Naturelle, Paris, FranceFrance
Institut fur Vogelforschung ’Vogelwarte Helgoland’, Wilhelmshaven, GermanyGermany
Museum für Naturkunde Berlin, GermanyGermany
Museum fur Naturkunde, Magdeburg, GermanyGermany
Naturhistoriches Museum Mainz, GermanyGermany
Naturkunde Museum im Ottoneum, Kassel, GermanyGermany
Pfalzmuseum fur Naturkunde, Bad Duerkheim, GermanyGermany
Senckenberg Museum, Forschungsinstitut Senckenberg (FIS), GermanyGermany
Staatliches Museum fur Naturkunde, Karlsruhe, GermanyGermany
Staatliches Museum fur Naturkunde, Stuttgart, GermanyGermany
Uberseemuseum, Bremen, GermanyGermany
Universitaet Halle, GermanyGermany
Westfalisches Museum fur Naturkunde, Munster, GermanyGermany
Zoologischen Sammlung der Universitat Rostock, GermanyGermany
Zoologisches Forschungsinstitut und Museum Alexander Koenig, GermanyGermany
Zoologisches Institut und Zoologisches Museum, Hamburg, GermanyGermany
Zoologisches Museum der Christian-Albrechts Universitat, GermanyGermany
Zoological Museum Amsterdam, NetherlandsNetherlands
Regional Museum of Natural History, IndiaIndia
Museum of Zoology, Bogor, IndonesiaIndonesia
National Museum of IrelandIreland
Coll. "A. Noro", City of Graglia (Biella), ItalyItaly
Museo Civico de Storia Naturale ’Giacomo Doria’, Genoa, ItalyItaly
Museo Civico di Storia Naturale di Carmagnola, ItalyItaly
Museo di Storia Naturale del Mediterraneo, Livorno, ItalyItaly
Museo di Storia Naturale di Terrasini, ItalyItaly
Museo Ornitologico ’F. Foschi’, ItalyItaly
Museo Regionale di Scienze Naturali, Torino, ItalyItaly
Museo Zoologico de La Specola, Florence, ItalyItaly
Museo Zoologico dell’ Accademia del Fisiocrtici, ItalyItaly
Universita di Pavia, ItalyItaly
Kaunas Zoological Museum, LithuaniaLithuania
Ulster Museum, Belfast, UKN Ireland
Fries Natuurmuseum, Leeuwarden, NetherlandsNetherlands
National Museum of Natural History, Leiden, NetherlandsNetherlands
Auckland Museum, New ZealandNew Zealand
Museum of Natural History and Archaeology, Trondheim, NorwayNorway
Universitets Museet I Tromso, NorwayNorway
Zoologisk Museum, Bergen, NorwayNorway
Museum of Natural History, Wroclaw University, PolandPoland
Zaklad Zoologii Systematycznej I Doswiadczalnej, PolandPoland
Museo Municipal do Funchal, PortugalPortugal
Museu Bocage, Lisbon, PortugalPortugal
Museu de Historia Natural-Zoologia, Porto, PortugalPortugal
Muzeul ’Tarii Crisurilor’, Oradea, RomaniaRomania
Zoological Institute RAS, St Petersburg, RussiaRussia
Zoological Museum of Moscow University (ZMMU), Moscow, RussiaRussia
Zoological Reference Collection, SingaporeSingapore
South African Museum, Cape Town, South AfricaSouth Africa
Estacion Biologica de Donana, Seville, SpainSpain
Museo Nacional de Ciencias Naturales, Madrid, SpainSpain
Ajtte Svensk Fjall- och Samemuseum, SwedenSweden
Malmo Museer, SwedenSweden
Naturhistoriska Museet, Gothenburg, SwedenSweden
Swedish Museum of Natural History, Stockholm, SwedenSweden
Zoologisk Museum, Lund, SwedenSweden
Musee Zoologie, Lausanne, SwitzerlandSwitzerland
Museum d’Histoire Naturelle de la Ville de Geneve, SwitzerlandSwitzerland
Museum d’Histoire Naturelle de Neuchatel, SwitzerlandSwitzerland
Naturhistorisches Museum Bern, SwitzerlandSwitzerland
Naturhistorisches Museum, Basel, SwitzerlandSwitzerland
Zoologisches Museum der Universitat Zurich-Irchel, SwitzerlandSwitzerland
Booth Museum of Natural History, Brighton, UKUK
Bristol Museums and Art Gallery Service, UKUK
Dorman Museum, Middlesbrough, UKUK
Glasgow Art Gallery and Museum, UKUK
Great North Museum: Hancock, UKUK
Leicester City Museums Service, UKUK
Liverpool Museum, UKUK
Manchester Museum, University of Manchester, UKUK
National Museums and Galleries of WalesUK
Nottinghamshire Biological and Geological Records Centre, UKUK
Oxford University Museum of Natural History, UKUK
Royal Albert Memorial Museum and Art Gallery, UKUK
Saffron Walden Museum, UKUK
Shropshire County Museum Service, UKUK
The Herbert Museum, Coventry, UKUK
The Natural History Museum, London, UK (BMNH)UK
Tullie House Museum and Art Gallery, Carlisle, UKUK
British Library National Sound Archive (NSA), UKUK
University Museum of Zoology Cambridge, UKUK
Academy of Natural Sciences, Philadelphia, USAUSA
American Museum of Natural History, New York, USAUSA
Bernice P. Bishop Museum, Hawai’i, USAUSA
Borror Laboratory of Bioacoustics, Ohio, USAUSA
Burke Museum of Natural History and Culture, Seattle, USAUSA
California Academy of Sciences, USAUSA
Carnegie Museum of Natural History, Pittsburgh, USAUSA
Cleveland Museum of Natural History, Ohio, USAUSA
Colorado University Museum, USAUSA
Cornell University Museum of Vertebrates, UKUSA
Delaware Museum of Natural History, USAUSA
Denver Museum of Nature and Science, USAUSA
Donald R Dickey Bird and Mammal Collection, UCLA, USAUSA
Florida Museum of Natural History, USAUSA
Humboldt State University Wildlife Museum, USAUSA
Los Angeles County Museum of Natural History, USAUSA
Michigan State University Museum, USAUSA
Museum of Comparative Zoology, Harvard, USAUSA
Museum of Vertebrate Zoology, Berkeley, USAUSA
Museum of Zoology, University of Michigan (UMMZ), USAUSA
New York State Museum, USAUSA
North Carolina State Museum of Natural Science, USAUSA
Sam Noble Museum of Natural History, University of Oklahoma, USAUSA
Santa Barbara Museum of Natural History, USAUSA
Slater Museum of Natural History, WA, USAUSA
Smithsonian National Museum of Natural History, USAUSA
The Bell Museum, Minnesota, USAUSA
The Field Museum, Chicago, USAUSA
University of Nebraska State Museum, USAUSA
Utah Museum of Natural History, University of Utah, USAUSA
Yale Peabody Museum, USAUSA

Literature

Data from the literature were added to those previously collected by McGowan[24]. Entire series of key English-language international and regional ornithological journals such as Ibis, Bird Conservation International, Journal of the Bombay Natural History Society, and Kukila were scanned for relevant information, availability allowing. We began at the library of the Zoological Society of London and followed up missing journal issues at the BirdLife International library, Cambridge UK; the British Library, London, UK; the Edward Grey Institute, University of Oxford, UK. Relevant Chinese literature was also scanned. Additionally, data were obtained from regional reports, personal diaries, letters, newsletters etc stored in the archives of BirdLife International, Cambridge, UK; the World Pheasant Association, Newcastle, UK; the Edward Grey Institute, University of Oxford, UK. Several of the species/regional experts we consulted also contributed their personal records which were recorded in the database as ‘personal communications’. As far as it were possible, records were classed as primary or secondary data within the ‘dynamicProperties’ field of GalliForm[14]. It is important to note that some primary records or museum specimens will be duplicated within the database in the secondary data.

Banding records

Eighty-three ornithological banding groups were identified using web-based searches and were contacted via email. Thirty of these groups replied and only seven were able to provide us with data (see Table 1). The majority of galliform species tend not to be banded due to their large body sizes and spurs. Additionally, many of the banding groups kept their records on paper and were not able to send them to us. Nevertheless, we were able to access and georeference 15,152 banding records.
Table 1

The ringing groups that shared data with GalliForm.

Ringing group
EURING
Zagreb Ringing Scheme
Hungarian Bird Ringing Centre
Finnish Museum of Natural History, Ringing Centre
Beringungszentrale Hiddensee
Coturnix ringing records, Italy
National Parks Board, Singapore (Ringing Centre)
The ringing groups that shared data with GalliForm.

Ornithological atlases

We digitised location data from 20 ornithological atlases (see Table 2). Data from several other atlases were not used since the range of dates for the records was wider than 20 years.
Table 2

The atlases that were digitised to be included in GalliForm.

AtlasYearEditors
The EBCC atlas of European breeding birds: their distribution and abundance[6]1997Hagemeijer, E.J.M. & Blair, M.J.
The atlas of breeding birds in Britain and Ireland[30]1976Sharrock, J.T.R.
The new atlas of breeding birds in Britain and Ireland[31]1993Gibbons, D.W.
Atlas of breeding birds of the West Midlands[32]1970Lord, J., Munns, D.J.
Atlas of the breeding birds of Andorra[33]2002Alamany, O., Auclair, R., Bertrand, A.
Atlas des oiseaux nicheurs de Belgique[34]1988Devilliers, P., Roggeman, W., Tricot, J., Del Marmol, P., Kerwijn, C., Jacob, J-P., Anselin, A.
Atlas of breeding birds in Luxembourg[35]1987Melchior, E.
Atlas van de Nederlandse Broedvogels 1973–1977[36]1979Teixeira, R.M.
Atlas van de Nederlandse Broedvogels 1978–1983[37]1987
Atlas das aves que nidificam em Portugal Continental[38]1989Rufino, R.
Atlante degli uccelli nidificanti e svernanti in Toscana[39]1997Florenzano, G.T., Arcamone, E., Baccetti, N., Meschini, E., Sposimo, P.
Atlas Hnizdniho Rozsireni Ptaku V CSSR[40]1987Stastny, K., Randik, A., Hudec, K.
Birds of Moscow city and the Moscow region[41]2006Kalyakin, M.V., Voltzit, O.V.
Eesti Linnuatlas[42]1993Renno, O.
Latvian breeding bird atlas[43]1989Priednieks, J., Strazds, M, Strazds, A. and Petrins, A.
Zimski ornitoloski atlas Slovenije[44]1993Sovinc, A.
Breeding bird atlas of Oman[45]1998Eriksen, J.
An interim atlas of the breeding birds of Arabia[46]1995Jennings, M.C.
Distribution atlas of Sudan’s birds with notes on habitat and status[47]1987Nikolaus, G.
Atlas of wintering birds of Japan[48]2004
The atlases that were digitised to be included in GalliForm.

Trip report website data

We used the two trip report websites that were popular with birders during the data recording period (2005–2008), www.travellingbirder.com and www.birdtours.co.uk. At that time, eBird (probably the most relevant current online source today) did not cover the majority of the countries within our study region, and our intention with the deposition of this dataset is to focus on pre-eBird data that are more difficult and time consuming to access. We extracted data from all trip reports of birdwatching visits to European, Asian and North African countries. Care was taken to enter reports that featured on both websites once only.

Criteria for data inclusion

To be included in the database, records had to meet the following criteria: The record identified the species of the bird concerned. The record contained either a verbal description of the locality at which the bird concerned was observed or the co-ordinates at which the bird was observed. Records of captive birds were excluded. Records relating to non-native occurrences were included but were flagged in the ‘establishmentMeans’ field as “introduced”.

Data entry

GalliForm[14] was originally compiled in the programme Microsoft Access 2003. To maximise uniformity in data entry, all data recorders were given thorough and consistent training and each was provided with a set of database guidelines. An Access Database form was created to standardise data entry and to enable multiple members of the team to collect data simultaneously. Each entry in GalliForm[14] corresponds to a single record of a single species recorded in a specific location. The data fields of GalliForm[14] are described in Online-only Table 3. The taxonomy used has been updated to be consistent with the BirdLife International 2019 taxonomy (datazone.birdlife.org). All information was entered exactly as it was described in the data source, with as much information extracted as possible. Multiple records from different sources which recorded the same information were still included in the interest of completeness. The only exception to this is the trip report data in which we did not enter identical records which occurred on both the Travelling Birder and Bird Tours websites.
Online-only Table 3

Explanation of the Field Names in GalliForm. All records have the following fields filled: catalogNumber, locality and scientificName.

Field NameDarwin Core classDescription of contents
institutionCodeRecord-levelThis name of the institution having custody of the object or information referred to in the record.
basisOfRecordRecord-levelThe specific nature of the data record, as defined by the standard labels of the Darwin Core classes, choices being “PreservedSpecimen” or “HumanObservation”.
dynamicPropertiesRecord-levelThe type of data source (coded within the field as “dataSource”) from which the record came, choices being “Literature”; “Museum”; “Atlas”; “Ringing”; “Website Trip Report”. Where known, from the literature were categorised as “primary” or “secondary” (coded as “dataType”).
catalogNumberOccurrenceA unique number (within GalliForm) for each record.
recordedByOccurrenceThe name of the person or expedition that collected the specimen.
individualCountOccurrenceThe number of individual birds that the record relates to.
organismQuantityOccurrenceA qualitative status statement relating to whether the species is common, rare etc in that locality.
sexOccurrenceThe sex of the individual(s) represented by the Occurrence
lifeStageOccurrenceThe life stage of the individuals(s) represented by the Occurrence.
establishmentMeansOccurrenceCoded as “introduced” if the Occurrence is outside a species’ native range.
occurrenceStatusOccurrenceA statement about the presence or absence of a taxon at a location
preparationsOccurrenceThe medium by which a museum specimen is preserved: Study Skin; Mounted Skin; Sound; Frozen Material; Tissue; Fluid-preserved Carcass; Fluid-preserved Skeleton; Egg; Nest; Skeletal Material; Wings.
associatedReferencesOccurrenceThe reference associated with the Occurrence.
otherCatalogNumbersOccurrenceThe catalogue number assigned to a specimen by a museum.
occurrenceRemarksOccurrenceAny information associated with the record that the data miner perceived as having potential relevance for the user, also any notes given on a museum label.
eventDateEventThe date or interval when the Event was recorded. 1890–12–2 would mean some time during the day of the 2nd of December, 1890; 1910–11 would mean some time during the month of November 1910, 2002 would mean some time during the year 2002; 1930–1935 would mean some time between the 1st of January 1930 and the 31st of December 1935; /2008 would mean some time before 31st December 2008.
yearEventThe year in which the individual(s) was recorded.
monthEventThe month in which the individual(s) was recorded, numerically coded, i.e. 1 represents January.
dayEventThe day of the month on which the individual(s) was recorded.
habitatEventThe type of habitat in which the individual was recorded, choices being bush; cultivation; desert; disturbed forest; forest; grassland; meadow; moor; road; rocky; scrubland; taiga; tundra; urban.
eventRemarksEventThe way the Event was observed: Specimen; Sight Record; Heard Record; Heard and Seen; Second Hand (i.e. the observer was told of the species’ presence by another.)
higherGeographyLocationA list (concatenated and separated) of geographic names less specific than the information captured in the locality term.
countryLocationThe name of the country in which the Location occurs. In a few cases, relating to older records, historical major administrative units are referred to e.g. USSR.
localityLocationThe specific description of the Location. The term may contain information modified from the original to correct perceived errors or standardise the description.
verbatimLocalityLocationThe original textual description of the locality.
minimumElevationInMetersLocationThe lower limit of the altitude at which the individual(s) was recorded, as measured in metres.
maximumElevationInMetersLocationThe upper limit of the altitude at which the individual(s) was recorded, as measured in metres.
decimalLatitudeLocationThe geographic latitude of the Location. Positive values are north of the Equator, negative values are south of it.
decimalLongitudeLocationThe geographic longitude of the Location. Positive values are east of the Greenwich Meridian, negative values are west of it.
geodeticDatumLocationThe ellipsoid on which the geographic coordinates given in decimalLatitude and decimalLongitude are based.
coordinateUncertaintyInMetersLocationThe horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location.
georeferenceProtocolLocationA reference to the methods used to determine the coordiantes and uncertainties.
georeferenceSourcesLocationA list of maps, gazetteers or other sources used to georeferenced the Location.
scientificNameTaxonThe full scientific name, (as given by BirdLife’s taxonomic checklist).
originalNameUsageTaxonThe taxon name as given by the original data source, e.g. museum label, report.
kingdomTaxonThe full scientific name of the kingdom in which the Taxon is classified.
phylumTaxonThe full scientific name of the phylum in which the Taxon is classified.
classTaxonThe full scientific name of the class in which the Taxon is classified.
orderTaxonThe full scientific name of the order in which the Taxon is classified.
familyTaxonThe full scientific name of the family in which the Taxon is classified.
genusTaxonThe full scientific name of the genus in which the Taxon is classified.
specificEpithetTaxonThe name of the species epithet of the scientific name.
vernacularNameTaxonThe vernacular name as given by the original data source, e.g. museum label, report.
The source of the data, i.e. literature, museum, atlas, ringing or website trip report is recorded in the ‘dynamicProperties’ field under the code “dataSource”. For literature data, (where known) the nature of the record, i.e. primary or secondary, is recorded under the code “datatype”. Taxonomy has of course changed considerably over time. To allow for this we recorded the taxonomy as it was described in the data source in the ‘originalNameUsage’ field. The current taxonomy was then selected from a look-up table. If at the time of data entry, the data compiler was unsure which species the synonym referred to, the species was tagged as “unknown” and the species was designated at a later date following further research on the synonym. Identical localities can also be described in multiple ways. We recorded the locality as it was given in the data source in the ‘verbatimLocality’ field. If the ‘verbatimLocality’ clearly tallied with a locality already within the database, the record was linked to that locality in order to increase georeferencing efficiency. It was rare for a source to record absence of evidence, i.e. a survey for a species at a particular locality which failed to find that species. However, in the few cases where we did come across such records, the locality and date of the survey were recorded and “absent” was recorded in the ‘occurrenceStatus’ field. Each record refers to an independent observation. For museum and ringing records, this means a single individual. For literature, atlas or trip report records this may refer to a group of birds observed in one particular locality, on one particular day. If given, the number of total individuals is recorded in the ‘individualCount’ field. The number of males and females is recorded in the ‘sex’ field and the number of juveniles and adults in the ‘lifeStage’ field. If the ‘lifeStage’ field is blank, it is reasonable to assume the individual(s) is an adult. Occasionally, additional information about the observation might be included in the data source, for example the habitat the bird was observed in or whether the bird was common or rare in that locality. These data are recorded in the ‘habitat’ and ‘organismQuantity’ fields, respectively. Any additional information which did not fit within the structure of the database was recorded in the ‘occurrenceRemarks’ field, along with any notes found on museum labels. For the purposes of data deposition, the database was converted to a tab-delimited CSV file with all fields following Darwin Core format. A full summary of these fields is given in Online-only Table 3.

Georeferencing

Locality descriptions were converted to geographic co-ordinates using a wide range of atlases and gazetteers, co-ordinates generally only being assigned if accurate to one degree (although in the majority of cases the locations were accurate to within 30 minutes, Table 3). We would initially search for a locality within the gazetteers available to us at the time. If the locality was not listed within those gazetteers we would search for the locality using atlases. Since this fieldwork was conducted, MaNIS standards have become widely used for studies of this kind, but these weren’t fully developed at the time of data collection[25]. Named places, e.g. towns or counties, were georeferenced using their geographic centre and georeferencing uncertainty measured from the centre to the edge of the named place. Often localities were given simply as the name of a river, mountain or Protected Area. In these instances we used the midpoint of the river between source and mouth (uncertainty measured as distance from midpoint to source/mouth), the summit of the mountain (uncertainty measured as distance from summit to approximate mountain foot) and the rough centre of the Protected Area (uncertainty measured as distance from centre to Protected Area edge). If a particular locality description matched two or more places their midpoint was taken (uncertainty measured as distance from midpoint to place). Offsets from localities (e.g. “50 km N of Kuala Lumpur”; “8 miles along the road from Sheffield to Chesterfield”) were measured using a digital atlas (uncertainty was approximated at the georeferencer’s discretion in these instances, usually between 3 and 10 arc-minutes, depending on the vagueness of the offset.) For georeferencing done ‘in house’, the gazeteer/atlas used was recorded.
Table 3

Georeference and date completeness of the records.

Record ClassNo. recordsNo. georeferenced to within 2 minutesNo. georeferenced to within 10 minutesNo. georeferenced to within 30 minutesNo. dated to within one yearNo. dated to within 10 yearsNo. georeferenced to within 30 minutes and dated to within one year
Event18668757173 (31%)58773 (32%)152930 (82%)91973 (49%)165312 (89%)65913 (35%)
Locality11890726282 (22%)26755 (23%)109651 (92%)N/AN/AN/A
Georeference and date completeness of the records. When possible, localities we could not georeference ourselves were sent to regional experts. 92% of our localities are georeferenced to an accuracy of 30 minutes, corresponding to 82% of occurrence records (see Table 3). We had less success at georeferencing museum records than literature records[15], due in part to difficulties in reading hand-writing on specimen labels. Older records were also harder to georeference, presumably due to changes in place names over time, and to some early ornithologists failing to document the collection locality. As might be expected, localities from countries that do not use the Roman alphabet were also harder to georeference. Some records were excluded from the database based on their locality: records which we thought were trading localities, notably Malacca in Malaysia and Leadenhall Market in the UK; records from captive specimens, e.g. zoological gardens.

Dating

49% of records are dated to within an accuracy of one year. Where possible, we assigned date ranges to undated records. For example, if the name of the collector was given on a museum specimen and we knew when that collector was active in that region, we assigned a date range covering that period. There remain undated records which could perhaps be dated in this way. Undated literature records were designated as occurring before their publication date. We were able to date 89% of records to within 10 years.

Data Records

A relational database structure was created in Microsoft Access to organise and store the species occurrence records with their spatial dependencies and data sources and to keep track of synonyms. For the purposes of publication, this database was converted to a tab-delimited CSV file that followed the Darwin Core format. We provide a dataset for Galliformes occurrences within the Palaearctic and Indo-Malay realms at species level. These data, obtained and curated as explained above, are available from the Global Biodiversity Information Facility (https://doi.org/10.15468/9825yw). Online-only Table 3 lists and describes the fields of GalliForm[14]. The following figures and tables summarise the dataset. Figure 1 shows the spatial distribution of records; Fig. 2 shows the accumulation of records through time; Fig. 3 shows the spatial distribution of the number of records, species richness and the most recent year of record; Fig. 4 shows the completeness of selected data fields. Table 1 lists the ringing groups which were able to share data with us; Table 2 lists the atlases that we digitised; Table 3 details the completeness of records which are georeferenced and/or dated to within 1 year. Online-only Table 1 details the number of records per species and the time span these records cover; Online-only Table 2 lists the museums which were able to share data with us; Online-only Table 3 describes the Field Names of GalliForm[14].
Fig. 3

The spatial distribution of the records, coloured coded by (a) the natural logarithm of the number of records within each cell, (b) the number of species within each cell and (c) the most recent year of record within each cell (cells which do not contain any dated records are shaded light grey). Cells are equal area and represent approximately 23,322 km2. Cells were drawn using the dgGridR package[28] in R[29].

Fig. 4

Percentage of data completeness of selected fields of GalliForm. Field descriptions are given in Online-only Table 3.

The spatial distribution of the records, coloured coded by (a) the natural logarithm of the number of records within each cell, (b) the number of species within each cell and (c) the most recent year of record within each cell (cells which do not contain any dated records are shaded light grey). Cells are equal area and represent approximately 23,322 km2. Cells were drawn using the dgGridR package[28] in R[29]. Percentage of data completeness of selected fields of GalliForm. Field descriptions are given in Online-only Table 3.

Technical Validation

Georeferenced data were subject to the following checks: That each data point was in the country that its locality described. That each data point was within reasonable distance of the species’ known historical range. That each data point that identifiably came from a protected area listed in the World Database of Protected Areas (https://www.protectedplanet.net/) was indeed within that protected area. Finally, data were sent to experts on regions/species for informal ‘refereeing’ to highlight dubious or missing data. We were able to referee approximately one third of the records in this way.

Usage Notes

The dataset described here can be used to investigate the spatial and temporal patterns of Galliformes distributions at multiple scales and resolutions. The dataset was first used to examine bias in different sources of biodiversity data[15]. It has also been used to investigate predictors of range change[18], to examine the effects of missing data on estimates of biodiversity metrics[10], to assess the completeness of geographic range estimates[16], to investigate the position of local extinctions with respect to species’ range edges[17], to explore the optimisation of Protected Area networks[20], to examine the local extirpation of species outside Protected Areas[12] and to model the potential distributions of highly threatened species[19,21]. There remains much scope for this database to inform further biodiversity or conservation related studies, for example, investigations of geographic range change or predictors of extinction risk. The data presented here do need to be interpreted carefully with respect to data bias and to missing data. Biodiversity data may be biased in a variety of ways, for example geographically, towards particular ecosystems or towards more charismatic species e.g.[26,27]. Additionally, these data biases may change over time. Although our database is based on a systematic and thorough search of all the data available to us from all regions covered, the data are still likely to be biased because there will have been intrinsic biases in the available data sources. For example, in this database, central India is under-represented in terms of recent research locales and it is hard to disentangle whether this is due to a lower number of ecologists focussing their studies there or if it is a justified skew as a result of biodiversity loss in this area. More recent records also show a bias toward threatened species and Protected Areas[15]. There are very few records of species absence although of course absence may be inferred if there are many records of other species in a particular locality. For a more detailed discussion of bias and missing data see Boakes et al.[15] and Boakes et al.[10].
Measurement(s)geographic location • Species • Occupancy
Technology Type(s)georeferencing • digital curation
Sample Characteristic - OrganismGalliformes sp.
Sample Characteristic - LocationPalearctic Region • Indomalayan Region
  8 in total

1.  Integrating biodiversity distribution knowledge: toward a global map of life.

Authors:  Walter Jetz; Jana M McPherson; Robert P Guralnick
Journal:  Trends Ecol Evol       Date:  2011-10-21       Impact factor: 17.712

2.  Population and geographic range dynamics: implications for conservation planning.

Authors:  Georgina M Mace; Ben Collen; Richard A Fuller; Elizabeth H Boakes
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-11-27       Impact factor: 6.237

Review 3.  How can a knowledge of the past help to conserve the future? Biodiversity conservation and the relevance of long-term ecological studies.

Authors:  Katherine J Willis; Miguel B Araújo; Keith D Bennett; Blanca Figueroa-Rangel; Cynthia A Froyd; Norman Myers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-02-28       Impact factor: 6.237

4.  Monitoring change in vertebrate abundance: the living planet index.

Authors:  Ben Collen; Jonathan Loh; Sarah Whitmee; Louise McRae; Rajan Amin; Jonathan E M Baillie
Journal:  Conserv Biol       Date:  2008-11-17       Impact factor: 6.560

5.  Global habitat suitability models of terrestrial mammals.

Authors:  Carlo Rondinini; Moreno Di Marco; Federica Chiozza; Giulia Santulli; Daniele Baisero; Piero Visconti; Michael Hoffmann; Jan Schipper; Simon N Stuart; Marcelo F Tognelli; Giovanni Amori; Alessandra Falcucci; Luigi Maiorano; Luigi Boitani
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-27       Impact factor: 6.237

6.  Distorted views of biodiversity: spatial and temporal bias in species occurrence data.

Authors:  Elizabeth H Boakes; Philip J K McGowan; Richard A Fuller; Ding Chang-qing; Natalie E Clark; Kim O'Connor; Georgina M Mace
Journal:  PLoS Biol       Date:  2010-06-01       Impact factor: 8.029

7.  Uncertainty in identifying local extinctions: the distribution of missing data and its effects on biodiversity measures.

Authors:  Elizabeth H Boakes; Richard A Fuller; Philip J K McGowan; Georgina M Mace
Journal:  Biol Lett       Date:  2016-03       Impact factor: 3.703

8.  Examining the relationship between local extinction risk and position in range.

Authors:  Elizabeth H Boakes; Nicholas J B Isaac; Richard A Fuller; Georgina M Mace; Philip J K McGowan
Journal:  Conserv Biol       Date:  2017-11-08       Impact factor: 6.560

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.