| Literature DB >> 33041496 |
Abstract
It is critical to understand the impact of distinct interventions on the ongoing coronavirus disease pandemic. I develop a behavioral dynamic epidemic model for multifaceted policy analysis comprising endogenous virus transmission (from severe or mild/asymptomatic cases), social contacts, and case testing and reporting. Calibration of the system dynamics model to the ongoing outbreak (31 December 2019-15 May 2020) using multiple time series data (reported cases and deaths, performed tests, and social interaction proxies) from six countries (South Korea, Germany, Italy, France, Sweden, and the United States) informs an explanatory analysis of outbreak responses and postpeak strategies. Specifically, I demonstrate, first, how timing and efforts of testing-capacity expansion and social-contact reduction interplay to affect outbreak dynamics and can explain a large share of cross-country variation in outbreak pathways. Second, absent at-scale availability of pharmaceutical solutions, postpeak social contacts must remain well below prepandemic values. Third, proactive (targeted) interventions, when complementing general deconfinement readiness, can considerably increase admissible postpeak social contacts.Entities:
Year: 2020 PMID: 33041496 PMCID: PMC7537277 DOI: 10.1002/sdr.1660
Source DB: PubMed Journal: Syst Dyn Rev ISSN: 0883-7066
Fig 1Data characterizing first‐wave outbreaks and responses, 31 December 2019 – 15 May 2020, for South Korea, Italy, and United States, showing reported cumulative cases and tests (per million people, pmp) and social‐contact metrics. Data sources: Our World in Data (Roser et al., 2020); Mobility Trends Reports (Apple, 2020); UNESCO (2020). [Color figure can be viewed at wileyonlinelibrary.com]
Fig 2High‐level model overview.
Fig 3Virus‐transmission structure (simplified representation).Note. Parameters with “*” are shown here as high‐level simplifications of more detailed parameters (see the section entitled “Infected population”). [Color figure can be viewed at wileyonlinelibrary.com]
Fig 4Infected population (detailed representation).Note. Stacked boxes refer to different status of detection and confinement (undetected vs. detected and not‐quarantined vs. home confined vs. quarantined). “State change” flows govern transfer between those different status (discussed in the section entitled “Case testing and reporting”). [Color figure can be viewed at wileyonlinelibrary.com]
Fig 5Social‐contact reduction in response to perceived outbreak severity (simplified representation). [Color figure can be viewed at wileyonlinelibrary.com]
Country‐specific outbreak characteristics for analyzed countries (until 15 May 2020)
| Country | SK | GER | ITA | FRA | SWE | US |
|---|---|---|---|---|---|---|
| Outbreak characteristics and population responses | ||||||
| First reported case | January 18 | January 19 | January 24 | January 27 | January 31 | January 19 |
| First time cumulative reported cases above 100 pmp | March 3 | March 17 | March 8 | March 16 | March 15 | March 22 |
| Cumulative reported cases pmp (15 May 2020) | 210 | 1930 | 3360 | 2560 | 2020 | 3160 |
| Peak time to first peak of new cases | March 2 | April 1 | March 25 | April 10 | na | April 24 |
| Peak time to first peak of active cases | April 5 | April 28 | May 13 | May 13 | na | na |
| General policy characteristics | Suppress | Early testing | Reactive but Strong | Reactive but Strong | Mitigate | Reactive |
| First time tests above 2500 pmp | March 3 | March 14 | March 17 | March 30 | March 28 | March 28 |
| First time social‐contact reduction above 50% | March 3 | March 21 | March 13 | March 21 | March 22 | April 11 |
| Maximum social‐contact reduction | 72% | 77% | 90% | 79% | 57% | 65% |
pmp, per million people.
Note that United States may peak again on a later date due to early and rapid deconfinement.
Estimated and otherwise derived values for virus‐transmission parameters identical across countries. Estimated parameter values shown here are rounded for visual purposes
| Shrt | Name | Value | Units | Derivation and justification |
|---|---|---|---|---|
|
| Infectivity Infectious Population |
| dmnl | Estimated. |
|
| Normal Contact Rate | 1.5 | dmnl/day | Free parameter. Infectious contacts = infectivity*contacts. Because infectivity and contacts cannot be independently observed, we can set |
|
| Relative Normal Contact Rate Infected Population | 0.164 | dmnl | Estimated. |
|
| Incubation Time | 5.1 | days | Based on literature. For COVID‐19 estimated between 2 and 14 days with 5.1‐days average (CDC, |
|
| Normal Fraction of Infected Cases Severe | 0.042 | dmnl | For actual, not reported, severe cases. Severe cases are defined in relation to hospitalization needs. The literature estimates range between 5% (Ferguson |
|
| Average Observed Viral Load Duration (Exposed; Infected) | 0.5; 6.5 | days | Based on literature. Infectivity may begin about 12 hours before onset of symptoms and, based on observed sampled cases, has been estimated to last 6–7 days after (Pan |
|
| Relative Exposed Infectivity Duration | 0.05 | dmnl | Based on literature/derived. The relative infectivity of a contact between susceptible and exposed individuals, |
|
| Relative Infectivity Duration of Severe (versus Mild) | Calculated | dmnl | Calculated. The purpose is to get an approximate value of the hard to estimate ratio severe versus mild case infectivity. |
|
| Time to Advanced Stage | 4.329 | days |
Calculated/based on literature. Time between onset of symptoms and advanced stage. Consistent with estimates of hospitalization time (severe cases) (Ferguson
|
|
| Time to Recover (Mild) | 4 | days | Based on literature. Using time between onset of mild symptoms and full recovery by Ferguson |
|
| Time to Recover (Severe) | 25* | days | Estimated. |
|
| Normal Infection Mortality Rate (severe) | 0.187 | dmnl | Estimated. |
|
| Maximum Relative Cross‐Region Contact Rate | 0.0017 | dmnl | Estimated. |
Estimated through cross‐sectional calibration using 31 December 2019 to 15 May 2020 data on reported cases, reported deaths, recovered cases, tests performed, and on social mobility and school‐closing data.
Estimated values for model parameters varying across countries. Estimated parameter values shown here are rounded for visual purposes
| Country | SK | GER | ITA | FRA | SWE | US |
|---|---|---|---|---|---|---|
| Virus Transmission and Clinical | ||||||
| Relative Fraction Actual Infected Cases Severe | 1.5* | 0.7* | 0.73 | 0.97 | 0.70 | 1 (ref) |
| Relative Infection Fatality Rate (Severe) | 0.99 | 1.22 | 1.5* | 1.394 | 1.5* | 1 (ref) |
| Time Total Cumulative Transmissions Exceed 100 | 21.9 | 21.5 | 1.6 | 9.1 | 34.5 | 5.1 |
| Social Contacts | ||||||
|
Reference Outbreak Level,
| 0.023 | 1.10 | 2.44 | 0.81 | 0.18 | 2.37 |
| Maximum Contact Reduction Fraction (Social Distancing) | 0.595 | 0.628 | 0.862 | 0.881 | 0.489 | 0.596 |
| Contact Reduction Exponent (General; Symptomatic (Relative)) | 1.53;0.02 | 0.19;0.16 | 0.30;0* | 0.21;0* | 0.39;0.08 | 0.23;0.15 |
| Relative Efforts Needed for Full Home Confinement Ability | 0* | 100* | 100* | 100* | 100* | 100* |
| Testing | ||||||
| Relative Testing Capacity Growth Rate | 3* | 2.05 | 1.12 | 1.52 | 0.76 | 1.51 |
| Relative Cumulative Hospitalization for Testing Capacity Start | 0.264 | 0.326 | 1.31 | 8.42 | 0.98 | 3.92 |
| Desired Relative Testing Capacity | 0.20e−3 | 0.73e−3 | 1.08e−3 | 0.32e−3 | 0.62e−3 | 0.65e−3 |
| Relative Targeted Testing Needed for Full Targeted Testing Ability | 0.03 | 100 | 0.32 | 0.86 | 0.84 | 0.43 |
The fraction of cases severe is expected to vary, to some degree, across countries. Therefore, with , with listed in Table 2 and estimated using a limited range (0.7–1.5 percent) while setting d = US as reference ( .
Infection mortality rates are expected to vary, to some degree, across countries, even controlling for severity of cases. Therefore, with , with listed in Table 2 and estimated using a limited range (0.7–1.5 percent) while setting d = US as reference ( .
Fig 6Data and calibrated simulation by country.Note. Horizontal axis: Initial time: 0 = 31 December 2019; 128 = 7 May 2020; final time: 136 = 15 May 2020. [Color figure can be viewed at wileyonlinelibrary.com]
Fig 7Baseline simulation: Calibrated simulation plus continuation with counterfactual out of sample scenario after 15 May 2020 assuming that social‐contact reductions are maintained until final time. [Color figure can be viewed at wileyonlinelibrary.com]
Fig 8Left panel: Sensitivity of cumulative actual deaths COVID‐19 (AD ) to changes in policy and citizen responses compared to the baseline: responsiveness of interventions (RI) to the outbreak, maximum social distancing (MSD), responsiveness of testing capacity (RT), and their joint effect (All). Right panel: sensitivity of present hospitalizations of coronavirus disease patients to same parameter changes. [Color figure can be viewed at wileyonlinelibrary.com]
Fig 9Sensitivity of cumulative deaths to policy interventions and citizen responses. Left: Interaction between responsiveness of interventions (RI) and testing capacity buildup (RT) for the United States. Right: Interaction between responsiveness of interventions (RI) and ability in identifying suspect cases for home confinement (SUS) for South Korea. [Color figure can be viewed at wileyonlinelibrary.com]
Fig 10Actual cumulative deaths (AD)as a function of deconfinement fraction (FDC) and relative ability in suspect case identification (SUS) at time = 500. Also varied: Contact tracing ability (CT; Left vs. Right) and initial experience with targeted interventions (ETA; Top vs. Bottom Rows).
Fig 11Resurgent outbreaks (response to reported cases), varying targeted testing effectiveness (measured by the Relative Targeting Effectiveness Parameter, rk ). [Color figure can be viewed at wileyonlinelibrary.com]
Fig 12Simulation of outbreak impact as a function of relative severe cases across two (hypothetical) demographic population segments (segment 1 = “vulnerable”; segment 2 = “less vulnerable), also varying relative contacts between segments. [Color figure can be viewed at wileyonlinelibrary.com]