Literature DB >> 33039896

Genomic, proteomic, and systems biology approaches in biomarker discovery for multiple sclerosis.

Carol Chase Huizar1, Itay Raphael2, Thomas G Forsthuber3.   

Abstract

Multiple sclerosis (MS) is a neuroinflammatory disorder characterized by autoimmune-mediated inflammatory lesions in CNS leading to myelin damage and axonal loss. MS is a heterogenous disease with variable and unpredictable disease course. Due to its complex nature, MS is difficult to diagnose and responses to specific treatments may vary between individuals. Therefore, there is an indisputable need for biomarkers for early diagnosis, prediction of disease exacerbations, monitoring the progression of disease, and for measuring responses to therapy. Genomic and proteomic studies have sought to understand the molecular basis of MS and find biomarker candidates. Advances in next-generation sequencing and mass-spectrometry techniques have yielded an unprecedented amount of genomic and proteomic data; yet, translation of the results into the clinic has been underwhelming. This has prompted the development of novel data science techniques for exploring these large datasets to identify biologically relevant relationships and ultimately point towards useful biomarkers. Herein we discuss optimization of omics study designs, advances in the generation of omics data, and systems biology approaches aimed at improving biomarker discovery and translation to the clinic for MS.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biomarkers; Genomic; Multiple sclerosis; Networks; Proteomic; Systems biology

Mesh:

Substances:

Year:  2020        PMID: 33039896      PMCID: PMC7927152          DOI: 10.1016/j.cellimm.2020.104219

Source DB:  PubMed          Journal:  Cell Immunol        ISSN: 0008-8749            Impact factor:   4.868


  234 in total

Review 1.  Data integration and systems biology approaches for biomarker discovery: challenges and opportunities for multiple sclerosis.

Authors:  Pablo Villoslada; Sergio Baranzini
Journal:  J Neuroimmunol       Date:  2012-01-24       Impact factor: 3.478

2.  Post-translational modifications in the rat lumbar spinal cord in experimental autoimmune encephalomyelitis.

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Review 3.  Systems biology meets -omic technologies: novel approaches to biomarker discovery and companion diagnostic development.

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Journal:  Expert Rev Mol Diagn       Date:  2014-11-01       Impact factor: 5.225

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Authors:  R Dobson; G Giovannoni
Journal:  Eur J Neurol       Date:  2018-11-18       Impact factor: 6.089

Review 5.  The bioinformatics tools for the genome assembly and analysis based on third-generation sequencing.

Authors:  YongKiat Wee; Salma Begum Bhyan; Yining Liu; Jiachun Lu; Xiaoyan Li; Min Zhao
Journal:  Brief Funct Genomics       Date:  2019-02-14       Impact factor: 4.241

6.  What are exosomes and how can they be used in multiple sclerosis therapy?

Authors:  Aya D Pusic; Kae M Pusic; Richard P Kraig
Journal:  Expert Rev Neurother       Date:  2014-02-19       Impact factor: 4.618

7.  Expression and Genetic Analysis of MicroRNAs Involved in Multiple Sclerosis.

Authors:  Elisa Ridolfi; Chiara Fenoglio; Claudia Cantoni; Alberto Calvi; Milena De Riz; Anna Pietroboni; Chiara Villa; Maria Serpente; Rossana Bonsi; Marco Vercellino; Paola Cavalla; Daniela Galimberti; Elio Scarpini
Journal:  Int J Mol Sci       Date:  2013-02-25       Impact factor: 5.923

8.  OBSERVATIONS ON ATTEMPTS TO PRODUCE ACUTE DISSEMINATED ENCEPHALOMYELITIS IN MONKEYS.

Authors:  T M Rivers; D H Sprunt; G P Berry
Journal:  J Exp Med       Date:  1933-06-30       Impact factor: 14.307

Review 9.  A Review of Pathway-Based Analysis Tools That Visualize Genetic Variants.

Authors:  Elisa Cirillo; Laurence D Parnell; Chris T Evelo
Journal:  Front Genet       Date:  2017-11-07       Impact factor: 4.599

Review 10.  Multi-omics approaches to disease.

Authors:  Yehudit Hasin; Marcus Seldin; Aldons Lusis
Journal:  Genome Biol       Date:  2017-05-05       Impact factor: 13.583

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  2 in total

1.  Plasma complement C7 as a target in non-small cell lung cancer patients to implement 3P medicine strategies.

Authors:  Jae Gwang Park; Beom Kyu Choi; Youngjoo Lee; Eun Jung Jang; Sang Myung Woo; Jun Hwa Lee; Kyung-Hee Kim; Heeyoun Hwang; Wonyoung Choi; Se-Hoon Lee; Byong Chul Yoo
Journal:  EPMA J       Date:  2021-11-25       Impact factor: 6.543

2.  RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases.

Authors:  Rasmus Magnusson; Olof Rundquist; Min Jung Kim; Sandra Hellberg; Chan Hyun Na; Mikael Benson; David Gomez-Cabrero; Ingrid Kockum; Jesper N Tegnér; Fredrik Piehl; Maja Jagodic; Johan Mellergård; Claudio Altafini; Jan Ernerudh; Maria C Jenmalm; Colm E Nestor; Min-Sik Kim; Mika Gustafsson
Journal:  Front Mol Biosci       Date:  2022-08-29
  2 in total

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