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Literature DB >> 8785321

Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution.

Abstract

A Monte Carlo algorithm that rapidly generates the scattered intensity function for complex heterogeneous particles is described. The heterogeneous particles are built from any number and orientation of simple building blocks, which include ellipsoidal shells, hollow ellipsoidal cylinders, ellipsoidal helices, triangular prisms, rectangular prisms, and semi-ellipsoidal shells. Applications are discussed such as real proteins and their complexes, polysaccharides, void effects on I(q), Guinier range estimation, and calculation of Stuhrmann plots.

Entities: Chemical

Mesh：

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Year: 1996 PMID： 8785321 PMCID： PMC1225131 DOI： 10.1016/S0006-3495(96)79725-4

Source DB: PubMed Journal: Biophys J ISSN： 0006-3495 Impact factor: 4.033

11 in total

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Journal: J Mol Biol Date: 1975-04-05 Impact factor: 5.469

2. Solution structure of phosphorylase kinase studied using small-angle X-ray and neutron scattering.

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Journal: Biochemistry Date: 1992-01-21 Impact factor: 3.162

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Authors: P Thiyagarajan; S J Henderson; A Joachimiak
Journal: Structure Date: 1996-01-15 Impact factor: 5.006

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Journal: Biopolymers Date: 1988-07 Impact factor: 2.505

6. Structure of dodecyl sulfate-protein complexes at subsaturating concentrations of free detergent.

Authors: K Ibel; R P May; M Sandberg; E Mascher; E Greijer; P Lundahl
Journal: Biophys Chem Date: 1994-12 Impact factor: 2.352

7. Relationship between conformation and biological response for (1----3)-beta-D-glucans in the activation of coagulation factor G from limulus amebocyte lysate and host-mediated antitumor activity. Demonstration of single-helix conformation as a stimulant.

Authors: H Saitô; Y Yoshioka; N Uehara; J Aketagawa; S Tanaka; Y Shibata
Journal: Carbohydr Res Date: 1991-09-18 Impact factor: 2.104

8. Histone H1 is located in the interior of the chromatin 30-nm filament.

Authors: V Graziano; S E Gerchman; D K Schneider; V Ramakrishnan
Journal: Nature Date: 1994-03-24 Impact factor: 49.962

9. Conformational changes in yeast phosphoglycerate kinase upon substrate binding.

Authors: S J Henderson; E H Serpersu; B S Gerhardt; G J Bunick
Journal: Biophys Chem Date: 1994-12 Impact factor: 2.352

Review 10. Cardiac electrophysiology, arrhythmogenic mechanisms and roentgen contrast media.

Authors: E A Jacobsen; H K Pedersen; N E Klow; H Refsum
Journal: Acta Radiol Suppl Date: 1995

14 in total

1. Structural characterization of the pH-denatured states of ferricytochrome-c by synchrotron small angle X-ray scattering.

Authors: S Cinelli; F Spinozzi; R Itri; S Finet; F Carsughi; G Onori; P Mariani
Journal: Biophys J Date: 2001-12 Impact factor: 4.033

2. Interaction of proteins in solution from small-angle scattering: a perturbative approach.

Authors: Francesco Spinozzi; Domenico Gazzillo; Achille Giacometti; Paolo Mariani; Flavio Carsughi
Journal: Biophys J Date: 2002-04 Impact factor: 4.033

3. 3D structure of Sulfolobus solfataricus carboxypeptidase developed by molecular modeling is confirmed by site-directed mutagenesis and small angle X-ray scattering.

Authors: Emanuela Occhipinti; Pier Luigi Martelli; Francesco Spinozzi; Federica Corsi; Cristina Formantici; Laura Molteni; Heintz Amenitsch; Paolo Mariani; Paolo Tortora; Rita Casadio
Journal: Biophys J Date: 2003-08 Impact factor: 4.033

4. Synchrotron SAXS studies on the structural stability of Carcinus aestuarii hemocyanin in solution.

Authors: Francesco Spinozzi; Elisabetta Maccioni; Cilâine Verônica Teixeira; Heinz Amenitsch; Roberto Favilla; Matteo Goldoni; Paolo Di Muro; Benedetto Salvato; Paolo Mariani; Mariano Beltramini
Journal: Biophys J Date: 2003-10 Impact factor: 4.033

5. Conformational changes in single-strand DNA as a function of temperature by SANS.

Authors: J Zhou; S K Gregurick; S Krueger; F P Schwarz
Journal: Biophys J Date: 2005-10-28 Impact factor: 4.033

6. Ligand-induced conformational changes in tissue transglutaminase: Monte Carlo analysis of small-angle scattering data.

Authors: P Mariani; F Carsughi; F Spinozzi; S Romanzetti; G Meier; R Casadio; C M Bergamini
Journal: Biophys J Date: 2000-06 Impact factor: 4.033

7. Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm.

Authors: P Chacón; F Morán; J F Díaz; E Pantos; J M Andreu
Journal: Biophys J Date: 1998-06 Impact factor: 4.033

8. Detection of submicron-sized raft-like domains in membranes by small-angle neutron scattering.

Authors: J Pencer; T Mills; V Anghel; S Krueger; R M Epand; J Katsaras
Journal: Eur Phys J E Soft Matter Date: 2005-11-15 Impact factor: 1.890

9. Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure.

Authors: E Paci; M Marchi
Journal: Proc Natl Acad Sci U S A Date: 1996-10-15 Impact factor: 11.205

10. A combined molecular/continuum-modeling approach to predict the small-angle neutron scattering of curved membranes.

Authors: Mitchell W Dorrell; Andrew H Beaven; Alexander J Sodt
Journal: Chem Phys Lipids Date: 2020-10-06 Impact factor: 3.329