Literature DB >> 33026137

COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data.

Ben Bond-Lamberty1, Danielle S Christianson2, Avni Malhotra3, Stephanie C Pennington1, Debjani Sihi4, Amir AghaKouchak5, Hassan Anjileli5, M Altaf Arain6, Juan J Armesto7,8, Samaneh Ashraf9, Mioko Ataka10, Dennis Baldocchi11, Thomas Andrew Black12, Nina Buchmann13, Mariah S Carbone14, Shih-Chieh Chang15, Patrick Crill16, Peter S Curtis17, Eric A Davidson18, Ankur R Desai19, John E Drake20, Tarek S El-Madany21, Michael Gavazzi22, Carolyn-Monika Görres23, Christopher M Gough24, Michael Goulden25, Jillian Gregg26, Omar Gutiérrez Del Arroyo11, Jin-Sheng He27, Takashi Hirano28, Anya Hopple29,30, Holly Hughes31, Järvi Järveoja32, Rachhpal Jassal12, Jinshi Jian1, Haiming Kan33, Jason Kaye34, Yuji Kominami35, Naishen Liang36, David Lipson37, Catriona A Macdonald38, Kadmiel Maseyk39, Kayla Mathes40, Marguerite Mauritz41, Melanie A Mayes4, Steve McNulty22, Guofang Miao42, Mirco Migliavacca21, Scott Miller43, Chelcy F Miniat44, Jennifer G Nietz17, Mats B Nilsson32, Asko Noormets45, Hamidreza Norouzi46, Christine S O'Connell11,47, Bruce Osborne48, Cecilio Oyonarte49, Zhuo Pang33, Matthias Peichl32, Elise Pendall38, Jorge F Perez-Quezada50,51, Claire L Phillips52, Richard P Phillips53, James W Raich54, Alexandre A Renchon38, Nadine K Ruehr55, Enrique P Sánchez-Cañete56, Matthew Saunders57, Kathleen E Savage58, Marion Schrumpf21, Russell L Scott59, Ulli Seibt60, Whendee L Silver11, Wu Sun61, Daphne Szutu11, Kentaro Takagi62, Masahiro Takagi63, Munemasa Teramoto36, Mark G Tjoelker38, Susan Trumbore21, Masahito Ueyama64, Rodrigo Vargas65, Ruth K Varner66, Joseph Verfaillie11, Christoph Vogel67, Jinsong Wang68, Greg Winston69, Tana E Wood70, Juying Wu33, Thomas Wutzler21, Jiye Zeng36, Tianshan Zha71, Quan Zhang72, Junliang Zou33.   

Abstract

Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO2 flux, commonly though imprecisely termed soil respiration (RS ), is one of the largest carbon fluxes in the Earth system. An increasing number of high-frequency RS measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for understanding GHG fluxes, but lack a central database or repository. Here we describe the lightweight, open-source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency and open access to data. While being oriented towards continuously measured RS , the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package.
© 2020 The Authors. Global Change Biology published by John Wiley & Sons Ltd.

Entities:  

Keywords:  carbon dioxide; greenhouse gases; methane; open data; open science; soil respiration

Year:  2020        PMID: 33026137      PMCID: PMC7756728          DOI: 10.1111/gcb.15353

Source DB:  PubMed          Journal:  Glob Chang Biol        ISSN: 1354-1013            Impact factor:   10.863


  17 in total

1.  Large-scale forest girdling shows that current photosynthesis drives soil respiration.

Authors:  P Högberg; A Nordgren; N Buchmann; A F Taylor; A Ekblad; M N Högberg; G Nyberg; M Ottosson-Löfvenius; D J Read
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  An Earth-system perspective of the global nitrogen cycle.

Authors:  Nicolas Gruber; James N Galloway
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

3.  Alveolar CO2 measured by expiration into the rapid infrared gas analyzer.

Authors:  A B DUBOIS; R C FOWLER; A SOFFER; W O FENN
Journal:  J Appl Physiol       Date:  1952-01       Impact factor: 3.531

4.  Open science, reproducibility, and transparency in ecology.

Authors:  Stephen M Powers; Stephanie E Hampton
Journal:  Ecol Appl       Date:  2018-11-30       Impact factor: 4.657

5.  High-frequency greenhouse gas flux measurement system detects winter storm surge effects on salt marsh.

Authors:  Heida L Diefenderfer; Valerie I Cullinan; Amy B Borde; Cailene M Gunn; Ronald M Thom
Journal:  Glob Chang Biol       Date:  2018-10-04       Impact factor: 10.863

Review 6.  Contribution of soil respiration to the global carbon equation.

Authors:  Ming Xu; Hua Shang
Journal:  J Plant Physiol       Date:  2016-08-31       Impact factor: 3.549

7.  Partitioning of the net CO2 exchange using an automated chamber system reveals plant phenology as key control of production and respiration fluxes in a boreal peatland.

Authors:  Järvi Järveoja; Mats B Nilsson; Michal Gažovič; Patrick M Crill; Matthias Peichl
Journal:  Glob Chang Biol       Date:  2018-05-24       Impact factor: 10.863

8.  High-resolution isotope measurements resolve rapid ecohydrological dynamics at the soil-plant interface.

Authors:  Till H M Volkmann; Kristine Haberer; Arthur Gessler; Markus Weiler
Journal:  New Phytol       Date:  2016-02-10       Impact factor: 10.151

9.  ForC: a global database of forest carbon stocks and fluxes.

Authors:  Kristina J Anderson-Teixeira; Maria M H Wang; Jennifer C McGarvey; Valentine Herrmann; Alan J Tepley; Ben Bond-Lamberty; David S LeBauer
Journal:  Ecology       Date:  2018-04-27       Impact factor: 5.499

10.  COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data.

Authors:  Ben Bond-Lamberty; Danielle S Christianson; Avni Malhotra; Stephanie C Pennington; Debjani Sihi; Amir AghaKouchak; Hassan Anjileli; M Altaf Arain; Juan J Armesto; Samaneh Ashraf; Mioko Ataka; Dennis Baldocchi; Thomas Andrew Black; Nina Buchmann; Mariah S Carbone; Shih-Chieh Chang; Patrick Crill; Peter S Curtis; Eric A Davidson; Ankur R Desai; John E Drake; Tarek S El-Madany; Michael Gavazzi; Carolyn-Monika Görres; Christopher M Gough; Michael Goulden; Jillian Gregg; Omar Gutiérrez Del Arroyo; Jin-Sheng He; Takashi Hirano; Anya Hopple; Holly Hughes; Järvi Järveoja; Rachhpal Jassal; Jinshi Jian; Haiming Kan; Jason Kaye; Yuji Kominami; Naishen Liang; David Lipson; Catriona A Macdonald; Kadmiel Maseyk; Kayla Mathes; Marguerite Mauritz; Melanie A Mayes; Steve McNulty; Guofang Miao; Mirco Migliavacca; Scott Miller; Chelcy F Miniat; Jennifer G Nietz; Mats B Nilsson; Asko Noormets; Hamidreza Norouzi; Christine S O'Connell; Bruce Osborne; Cecilio Oyonarte; Zhuo Pang; Matthias Peichl; Elise Pendall; Jorge F Perez-Quezada; Claire L Phillips; Richard P Phillips; James W Raich; Alexandre A Renchon; Nadine K Ruehr; Enrique P Sánchez-Cañete; Matthew Saunders; Kathleen E Savage; Marion Schrumpf; Russell L Scott; Ulli Seibt; Whendee L Silver; Wu Sun; Daphne Szutu; Kentaro Takagi; Masahiro Takagi; Munemasa Teramoto; Mark G Tjoelker; Susan Trumbore; Masahito Ueyama; Rodrigo Vargas; Ruth K Varner; Joseph Verfaillie; Christoph Vogel; Jinsong Wang; Greg Winston; Tana E Wood; Juying Wu; Thomas Wutzler; Jiye Zeng; Tianshan Zha; Quan Zhang; Junliang Zou
Journal:  Glob Chang Biol       Date:  2020-10-07       Impact factor: 10.863

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  2 in total

1.  Low N2O and variable CH4 fluxes from tropical forest soils of the Congo Basin.

Authors:  Matti Barthel; Marijn Bauters; Simon Baumgartner; Travis W Drake; Nivens Mokwele Bey; Glenn Bush; Pascal Boeckx; Clement Ikene Botefa; Nathanaël Dériaz; Gode Lompoko Ekamba; Nora Gallarotti; Faustin M Mbayu; John Kalume Mugula; Isaac Ahanamungu Makelele; Christian Ekamba Mbongo; Joachim Mohn; Joseph Zambo Mandea; Davin Mata Mpambi; Landry Cizungu Ntaboba; Montfort Bagalwa Rukeza; Robert G M Spencer; Laura Summerauer; Bernard Vanlauwe; Kristof Van Oost; Benjamin Wolf; Johan Six
Journal:  Nat Commun       Date:  2022-01-17       Impact factor: 14.919

2.  COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data.

Authors:  Ben Bond-Lamberty; Danielle S Christianson; Avni Malhotra; Stephanie C Pennington; Debjani Sihi; Amir AghaKouchak; Hassan Anjileli; M Altaf Arain; Juan J Armesto; Samaneh Ashraf; Mioko Ataka; Dennis Baldocchi; Thomas Andrew Black; Nina Buchmann; Mariah S Carbone; Shih-Chieh Chang; Patrick Crill; Peter S Curtis; Eric A Davidson; Ankur R Desai; John E Drake; Tarek S El-Madany; Michael Gavazzi; Carolyn-Monika Görres; Christopher M Gough; Michael Goulden; Jillian Gregg; Omar Gutiérrez Del Arroyo; Jin-Sheng He; Takashi Hirano; Anya Hopple; Holly Hughes; Järvi Järveoja; Rachhpal Jassal; Jinshi Jian; Haiming Kan; Jason Kaye; Yuji Kominami; Naishen Liang; David Lipson; Catriona A Macdonald; Kadmiel Maseyk; Kayla Mathes; Marguerite Mauritz; Melanie A Mayes; Steve McNulty; Guofang Miao; Mirco Migliavacca; Scott Miller; Chelcy F Miniat; Jennifer G Nietz; Mats B Nilsson; Asko Noormets; Hamidreza Norouzi; Christine S O'Connell; Bruce Osborne; Cecilio Oyonarte; Zhuo Pang; Matthias Peichl; Elise Pendall; Jorge F Perez-Quezada; Claire L Phillips; Richard P Phillips; James W Raich; Alexandre A Renchon; Nadine K Ruehr; Enrique P Sánchez-Cañete; Matthew Saunders; Kathleen E Savage; Marion Schrumpf; Russell L Scott; Ulli Seibt; Whendee L Silver; Wu Sun; Daphne Szutu; Kentaro Takagi; Masahiro Takagi; Munemasa Teramoto; Mark G Tjoelker; Susan Trumbore; Masahito Ueyama; Rodrigo Vargas; Ruth K Varner; Joseph Verfaillie; Christoph Vogel; Jinsong Wang; Greg Winston; Tana E Wood; Juying Wu; Thomas Wutzler; Jiye Zeng; Tianshan Zha; Quan Zhang; Junliang Zou
Journal:  Glob Chang Biol       Date:  2020-10-07       Impact factor: 10.863

  2 in total

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