Literature DB >> 33022844

Computing and visualising intra-voxel orientation-specific relaxation-diffusion features in the human brain.

João P de Almeida Martins1,2, Chantal M W Tax3,4, Alexis Reymbaut1,2, Filip Szczepankiewicz5,6,7, Maxime Chamberland3, Derek K Jones3,8, Daniel Topgaard1,2.   

Abstract

Diffusion MRI techniques are used widely to study the characteristics of the human brain connectome in vivo. However, to resolve and characterise white matter (WM) fibres in heterogeneous MRI voxels remains a challenging problem typically approached with signal models that rely on prior information and constraints. We have recently introduced a 5D relaxation-diffusion correlation framework wherein multidimensional diffusion encoding strategies are used to acquire data at multiple echo-times to increase the amount of information encoded into the signal and ease the constraints needed for signal inversion. Nonparametric Monte Carlo inversion of the resulting datasets yields 5D relaxation-diffusion distributions where contributions from different sub-voxel tissue environments are separated with minimal assumptions on their microscopic properties. Here, we build on the 5D correlation approach to derive fibre-specific metrics that can be mapped throughout the imaged brain volume. Distribution components ascribed to fibrous tissues are resolved, and subsequently mapped to a dense mesh of overlapping orientation bins to define a smooth orientation distribution function (ODF). Moreover, relaxation and diffusion measures are correlated to each independent ODF coordinate, thereby allowing the estimation of orientation-specific relaxation rates and diffusivities. The proposed method is tested on a healthy volunteer, where the estimated ODFs were observed to capture major WM tracts, resolve fibre crossings, and, more importantly, inform on the relaxation and diffusion features along with distinct fibre bundles. If combined with fibre-tracking algorithms, the methodology presented in this work has potential for increasing the depth of characterisation of microstructural properties along individual WM pathways.
© 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.

Entities:  

Keywords:  diffusion MRI; fibre ODF; fibre-specific metrics; partial volume effects; tensor-valued diffusion encoding; white matter

Mesh:

Year:  2020        PMID: 33022844      PMCID: PMC7776010          DOI: 10.1002/hbm.25224

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.399


  86 in total

1.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

2.  Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging.

Authors:  Ben Jeurissen; Alexander Leemans; Jacques-Donald Tournier; Derek K Jones; Jan Sijbers
Journal:  Hum Brain Mapp       Date:  2012-05-19       Impact factor: 5.038

3.  elastix: a toolbox for intensity-based medical image registration.

Authors:  Stefan Klein; Marius Staring; Keelin Murphy; Max A Viergever; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2009-11-17       Impact factor: 10.048

Review 4.  Inferring brain tissue composition and microstructure via MR relaxometry.

Authors:  Mark D Does
Journal:  Neuroimage       Date:  2018-01-02       Impact factor: 6.556

5.  REPULSION, A Novel Approach to Efficient Powder Averaging in Solid-State NMR

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Journal:  J Magn Reson       Date:  1997-03       Impact factor: 2.229

6.  Two-Dimensional Correlation of Isotropic and Directional Diffusion Using NMR.

Authors:  João P de Almeida Martins; Daniel Topgaard
Journal:  Phys Rev Lett       Date:  2016-02-23       Impact factor: 9.161

Review 7.  Diffusion MRI visualization.

Authors:  Thomas Schultz; Anna Vilanova
Journal:  NMR Biomed       Date:  2018-02-27       Impact factor: 4.044

8.  Accuracy and precision of statistical descriptors obtained from multidimensional diffusion signal inversion algorithms.

Authors:  Alexis Reymbaut; Paolo Mezzani; João P de Almeida Martins; Daniel Topgaard
Journal:  NMR Biomed       Date:  2020-02-17       Impact factor: 4.044

9.  Compromised white matter tract integrity in schizophrenia inferred from diffusion tensor imaging.

Authors:  K O Lim; M Hedehus; M Moseley; A de Crespigny; E V Sullivan; A Pfefferbaum
Journal:  Arch Gen Psychiatry       Date:  1999-04

10.  Towards unconstrained compartment modeling in white matter using diffusion-relaxation MRI with tensor-valued diffusion encoding.

Authors:  Björn Lampinen; Filip Szczepankiewicz; Johan Mårtensson; Danielle van Westen; Oskar Hansson; Carl-Fredrik Westin; Markus Nilsson
Journal:  Magn Reson Med       Date:  2020-03-06       Impact factor: 4.668

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  9 in total

1.  Nonparametric 5D D-R2 distribution imaging with single-shot EPI at 21.1 T: Initial results for in vivo rat brain.

Authors:  Jens T Rosenberg; Samuel C Grant; Daniel Topgaard
Journal:  J Magn Reson       Date:  2022-06-15       Impact factor: 2.734

Review 2.  Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact.

Authors:  Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller; Chantal M W Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; Chiara Maffei; Gabriel Ramos-Llordén; Aapo Nummenmaa; Thomas Witzel; Anastasia Yendiki; Yi-Qiao Song; Chu-Chung Huang; Ching-Po Lin; Nikolaus Weiskopf; Alfred Anwander; Derek K Jones; Bruce R Rosen; Lawrence L Wald; Susie Y Huang
Journal:  Neuroimage       Date:  2022-02-23       Impact factor: 7.400

3.  Accelerating joint relaxation-diffusion MRI by integrating time division multiplexing and simultaneous multi-slice (TDM-SMS) strategies.

Authors:  Yang Ji; W Scott Hoge; Borjan Gagoski; Carl-Fredrik Westin; Yogesh Rathi; Lipeng Ning
Journal:  Magn Reson Med       Date:  2022-01-28       Impact factor: 3.737

Review 4.  Combined diffusion-relaxometry microstructure imaging: Current status and future prospects.

Authors:  Paddy J Slator; Marco Palombo; Karla L Miller; Carl-Fredrik Westin; Frederik Laun; Daeun Kim; Justin P Haldar; Dan Benjamini; Gregory Lemberskiy; Joao P de Almeida Martins; Jana Hutter
Journal:  Magn Reson Med       Date:  2021-08-19       Impact factor: 3.737

5.  Distortion-Free Diffusion Imaging Using Self-Navigated Cartesian Echo-Planar Time Resolved Acquisition and Joint Magnitude and Phase Constrained Reconstruction.

Authors:  Erpeng Dai; Philip K Lee; Zijing Dong; Fanrui Fu; Kawin Setsompop; Jennifer A McNab
Journal:  IEEE Trans Med Imaging       Date:  2021-12-30       Impact factor: 10.048

6.  Toward nonparametric diffusion- T 1 characterization of crossing fibers in the human brain.

Authors:  Alexis Reymbaut; Jeffrey Critchley; Giuliana Durighel; Tim Sprenger; Michael Sughrue; Karin Bryskhe; Daniel Topgaard
Journal:  Magn Reson Med       Date:  2020-12-10       Impact factor: 4.668

7.  Quantifying myelin in crossing fibers using diffusion-prepared phase imaging: Theory and simulations.

Authors:  Michiel Cottaar; Wenchuan Wu; Benjamin C Tendler; Zoltan Nagy; Karla Miller; Saad Jbabdi
Journal:  Magn Reson Med       Date:  2021-07-13       Impact factor: 3.737

8.  Histopathological modeling of status epilepticus-induced brain damage based on in vivo diffusion tensor imaging in rats.

Authors:  Isabel San Martín Molina; Raimo A Salo; Olli Gröhn; Jussi Tohka; Alejandra Sierra
Journal:  Front Neurosci       Date:  2022-07-29       Impact factor: 5.152

9.  Computing and visualising intra-voxel orientation-specific relaxation-diffusion features in the human brain.

Authors:  João P de Almeida Martins; Chantal M W Tax; Alexis Reymbaut; Filip Szczepankiewicz; Maxime Chamberland; Derek K Jones; Daniel Topgaard
Journal:  Hum Brain Mapp       Date:  2020-10-06       Impact factor: 5.399

  9 in total

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