| Literature DB >> 33014822 |
Khurum Khan1, Reyes Gonzalez-Exposito2, David Cunningham2, Dow-Mu Koh3, Andrew Woolston4, Louise Barber4, Beatrice Griffiths4, Kyriakos Kouvelakis2, Vanessa Calamai2, Monia Bali3, Nasir Khan3, Annette Bryant2, Claire Saffery2, Charles Dearman2, Ruwaida Begum2, Sheela Rao2, Naureen Starling2, David Watkins2, Ian Chau2, Chiara Braconi2, Nicola Valeri2,5, Marco Gerlinger2,4, Nicos Fotiadis3.
Abstract
BACKGROUND: Image-guided tissue biopsies are critically important in the diagnosis and management of cancer patients. High-yield samples are also vital for biomarker and resistance mechanism discovery through molecular/genomic analyses. PATIENTS AND METHODS: All consecutive patients who underwent plugged image-guided biopsy at Royal Marsden from June 2013 until September 2016 were included in the analysis. In the next step, a second cohort of patients prospectively treated within two clinical trials (PROSPECT-C and PROSPECT-R) were assessed for the DNA yield from biopsies assessed for complex genomic analysis.Entities:
Keywords: clinical trials; coaxial core-needle biopsy system; formalin-fixed paraffin-embedded; genomic analysis; tissue biopsies
Year: 2020 PMID: 33014822 PMCID: PMC7500492 DOI: 10.3389/fonc.2020.01634
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
FIGURE 1Biopsy examples of patients within the study (A) A computed tomography (CT) of a patient with a highly vascular retroperitoneal mass thought to be too high risk to biopsy at the local hospital. Surgery was also considered to be high risk of R1/R2 resection, and a CT-guided biopsy was recommended by our multidisciplinary team (MDT). (B) Biopsy was performed with a 15-G/16-G coaxial needle. The tract was plugged with 16-G Hunter plugs, and there were no complications. The biopsy showed an inflammatory myofibroblastic tumor, which responded well on steroids and an operation was avoided. (C) PET/CT of a 57-year-old patient with relapsed Hodgkin’s lymphoma after six cycles of ABVD chemotherapy. There was response in all sites of disease with the exception of a plaque of tissue behind the fundus of the stomach, which appear [18F]-fluorodeoxyglucose (FDG) avid on PET scan. A decision of the MDT was made to biopsy the lesion in order to exclude transformation of lymphoma. (D) The 17-G coaxial needle was placed medial to the left adrenal and above the splenic vessels adjacent to the lesion. Three cores were taken, and the tract was plugged. There were no complications. The biopsy showed Hodgkin’s lymphoma, which responded well to systemic therapy and consolidation RT. (E) Coronal CT images of a 48-year-old patient with a large tumor of the inferior vena cava (IVC) extending from the level of the renal veins to the right atrium. Occluded hepatic veins and ascites can be seen on the scan. (F) The lesion was biopsied with a 15-G/16-G coaxial needle. (G) The tract was plugged with three gelfoam pledgets. A diagnosis of leiomyosarcoma of the IVC was made, and the procedure had no complications.
FIGURE 2Maximum DNA yield of the whole analyzed cohort from PROSPECT-C and PROSPECT-R patients. (A) Cases with DNA yield >10 μg are plotted against right Y-axis. (B) Cases divided according to their DNA concentration. Median value and with 95% CI represented in gray bars. In the small square cases with DNA concentration < 100 ng/ml are plotted against the left Y-axis.
FIGURE 3Sanger sequencing for KRAS p.G12/G13 mutation with example of (A) high tumour content, (B) medium tumour content, (C) low tumour content, and (D) undetectable tumour content.
DNA extraction and estimated tumor content.
| PROSPECT-C | PROSPECT-R | Total | |
| Number of BL | 15 | 31 | 46 |
| Number of PD | 15 | 21 | 36 |
| Number of pairs (BL/PD) | 7 | 19 | 26 |
| Attempted DNA extraction (total) | 30 | 33 | 63 |
| Attempted DNA extraction (BL) | 15 | 31 | 46 |
| Attempted DNA extraction (PD) | 15 | 2 | 17 |
| Attempted DNA extraction (pairs BL/PD) | 7 | 2 | 9 |
| DNA yield > 1 μg (total) | 27 | 31 | 58 |
| DNA yield > 1 μg (BL) | 13 | 29 | 42 |
| DNA yield > 1 μg (PD) | 14 | 2 | 16 |
| DNA yield > 1 μg (pairs BL/PD) | 6 | 2 | 8 |
| Estimated tumor content (total) | 30 | 32 | 62 |
| ≥20% | 22 | 27 | 49 |
| <20% | 8 | 5 | 13 |
| Estimated tumor content (BL) | 15 | 31 | 46 |
| ≥20% | 11 | 27 | 38 |
| <20% | 4 | 4 | 8 |
| Estimated tumor content (PD) | 15 | 1 | 16 |
| ≥20% | 11 | 0 | 11 |
| <20% | 4 | 1 | 5 |
| Estimated tumor content in BL/PD pairs | 7 | 1 | 8 |
| ≥20% | 4 | 0 | 4 |
| <20% | 3 | 1 | 4 |
Sample tumor content estimated from Sanger sequencing.
| PROSPECT-R | |
| Number of samples sequenced: | 49 |
| Number of cores sequenced per sample: | |
| 1 core: | 35 |
| 2 cores: | 10 |
| 3 cores: | 4 |
| Number of high tumor content cores: | 12 |
| Number of medium tumor content cores: | 27 |
| Number of low tumor content cores: | 6 |
| Number of cores with no detectable tumor content: | 22 |