Literature DB >> 33010087

PlantSPEAD: a web resource towards comparatively analysing stress-responsive expression of splicing-related proteins in plant.

Mo-Xian Chen1,2, Long-Can Mei3, Fan Wang3, Iromi Kusum Wijethunge Boyagane Dewayalage3, Jing-Fang Yang3, Lei Dai2, Guang-Fu Yang3, Bei Gao4, Chao-Lin Cheng4, Ying-Gao Liu5, Jianhua Zhang4, Ge-Fei Hao1.   

Abstract

Entities:  

Keywords:  alternative splicing; database; gene expression; splicing factor; stress

Mesh：

Substances：

Year:  2020        PMID： 33010087      PMCID： PMC7868970          DOI： 10.1111/pbi.13486

Source DB:  PubMed          Journal:  Plant Biotechnol J        ISSN： 1467-7644            Impact factor:   9.803


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  11 in total

1.  Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings.

Authors:  Fu-Yuan Zhu; Mo-Xian Chen; Neng-Hui Ye; Lu Shi; Kai-Long Ma; Jing-Fang Yang; Yun-Ying Cao; Youjun Zhang; Takuya Yoshida; Alisdair R Fernie; Guang-Yi Fan; Bo Wen; Ruo Zhou; Tie-Yuan Liu; Tao Fan; Bei Gao; Di Zhang; Ge-Fei Hao; Shi Xiao; Ying-Gao Liu; Jianhua Zhang
Journal:  Plant J       Date:  2017-06-07       Impact factor: 6.417

2.  EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.

Authors:  Ashwini Bhasi; Ram Vinay Pandey; Suriya Prabha Utharasamy; Periannan Senapathy
Journal:  Bioinformatics       Date:  2007-03-07       Impact factor: 6.937

3.  The Splicing Factor PRP31 Is Involved in Transcriptional Gene Silencing and Stress Response in Arabidopsis.

Authors:  Jin-Lu Du; Su-Wei Zhang; Huan-Wei Huang; Tao Cai; Lin Li; She Chen; Xin-Jian He
Journal:  Mol Plant       Date:  2015-02-13       Impact factor: 13.164

4.  Phylogenetic comparison of 5' splice site determination in central spliceosomal proteins of the U1-70K gene family, in response to developmental cues and stress conditions.

Authors:  Mo-Xian Chen; Kai-Lu Zhang; Bei Gao; Jing-Fang Yang; Yuan Tian; Debatosh Das; Tao Fan; Lei Dai; Ge-Fei Hao; Guang-Fu Yang; Jianhua Zhang; Fu-Yuan Zhu; Yan-Ming Fang
Journal:  Plant J       Date:  2020-04-24       Impact factor: 6.417

5.  SpliceAid 2: a database of human splicing factors expression data and RNA target motifs.

Authors:  Francesco Piva; Matteo Giulietti; Alessandra Ballone Burini; Giovanni Principato
Journal:  Hum Mutat       Date:  2011-10-17       Impact factor: 4.878

6.  Spliceosomal protein U1A is involved in alternative splicing and salt stress tolerance in Arabidopsis thaliana.

Authors:  Jinbao Gu; Zhiqiang Xia; Yuehua Luo; Xingyu Jiang; Bilian Qian; He Xie; Jian-Kang Zhu; Liming Xiong; Jianhua Zhu; Zhen-Yu Wang
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

7.  SpliceInfo: an information repository for mRNA alternative splicing in human genome.

Authors:  Hsien-Da Huang; Jorng-Tzong Horng; Feng-Mao Lin; Yu-Chung Chang; Chen-Chia Huang
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

8.  The dynamic landscape of fission yeast meiosis alternative-splice isoforms.

Authors:  Zheng Kuang; Jef D Boeke; Stefan Canzar
Journal:  Genome Res       Date:  2016-11-17       Impact factor: 9.043

9.  Alternative splicing and translation play important roles in hypoxic germination in rice.

Authors:  Mo-Xian Chen; Fu-Yuan Zhu; Feng-Zhu Wang; Neng-Hui Ye; Bei Gao; Xi Chen; Shan-Shan Zhao; Tao Fan; Yun-Ying Cao; Tie-Yuan Liu; Ze-Zhuo Su; Li-Juan Xie; Qi-Juan Hu; Hui-Jie Wu; Shi Xiao; Jianhua Zhang; Ying-Gao Liu
Journal:  J Exp Bot       Date:  2019-02-05       Impact factor: 6.992

10.  PlantSPEAD: a web resource towards comparatively analysing stress-responsive expression of splicing-related proteins in plant.

Authors:  Mo-Xian Chen; Long-Can Mei; Fan Wang; Iromi Kusum Wijethunge Boyagane Dewayalage; Jing-Fang Yang; Lei Dai; Guang-Fu Yang; Bei Gao; Chao-Lin Cheng; Ying-Gao Liu; Jianhua Zhang; Ge-Fei Hao
Journal:  Plant Biotechnol J       Date:  2020-10-25       Impact factor: 9.803
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  11 in total

1.  In Situ Observation of Abscisic Acid Distribution in Major Crop Species by Immunofluorescence Labeling.

Authors:  Mo-Xian Chen; Chong-Chong Lu; Jianhua Zhang; Ying-Gao Liu
Journal:  Methods Mol Biol       Date:  2022

Review 2.  Alternative Splicing and Its Roles in Plant Metabolism.

Authors:  Pui Ying Lam; Lanxiang Wang; Clive Lo; Fu-Yuan Zhu
Journal:  Int J Mol Sci       Date:  2022-07-01       Impact factor: 6.208

Review 3.  The Importance of a Genome-Wide Association Analysis in the Study of Alternative Splicing Mutations in Plants with a Special Focus on Maize.

Authors:  Zi-Chang Jia; Xue Yang; Xuan-Xuan Hou; Yong-Xin Nie; Jian Wu
Journal:  Int J Mol Sci       Date:  2022-04-11       Impact factor: 6.208

Review 4.  Emerging Function of Ecotype-Specific Splicing in the Recruitment of Commensal Microbiome.

Authors:  Yue-Han Li; Yuan-You Yang; Zhi-Gang Wang; Zhuo Chen
Journal:  Int J Mol Sci       Date:  2022-04-27       Impact factor: 6.208

5.  Phylogeny and conservation of plant U2A/U2A', a core splicing component in U2 spliceosomal complex.

Authors:  Yue Liu; Yuan Tian; Lan-Xiang Wang; Tao Fan; Jianhua Zhang; Mo-Xian Chen; Ying-Gao Liu
Journal:  Planta       Date:  2021-12-23       Impact factor: 4.116

6.  Identifying QTLs for Grain Size in a Colossal Grain Rice (Oryza sativa L.) Line, and Analysis of Additive Effects of QTLs.

Authors:  Xuanxuan Hou; Moxian Chen; Yinke Chen; Xin Hou; Zichang Jia; Xue Yang; Jianhua Zhang; Yinggao Liu; Nenghui Ye
Journal:  Int J Mol Sci       Date:  2022-03-24       Impact factor: 6.208

7.  Moderate Soil Drying-Induced Alternative Splicing Provides a Potential Novel Approach for the Regulation of Grain Filling in Rice Inferior Spikelets.

Authors:  Zhenning Teng; Qin Zheng; Bohan Liu; Shuan Meng; Jianhua Zhang; Nenghui Ye
Journal:  Int J Mol Sci       Date:  2022-07-14       Impact factor: 6.208

8.  Overexpression of the Arabidopsis MACPF Protein AtMACP2 Promotes Pathogen Resistance by Activating SA Signaling.

Authors:  Xue Zhang; Yang-Shuo Dai; Yu-Xin Wang; Ze-Zhuo Su; Lu-Jun Yu; Zhen-Fei Zhang; Shi Xiao; Qin-Fang Chen
Journal:  Int J Mol Sci       Date:  2022-08-07       Impact factor: 6.208

Review 9.  Secondary Metabolites of Osmanthus fragrans: Metabolism and Medicinal Value.

Authors:  Chen-Chen Fu; Fa-Ying Xu; Yu-Chen Qian; Hoi-Lun Koo; Yi-Fan Duan; Geng-Min Weng; Tai-Ping Fan; Mo-Xian Chen; Fu-Yuan Zhu
Journal:  Front Pharmacol       Date:  2022-07-18       Impact factor: 5.988

10.  PlantSPEAD: a web resource towards comparatively analysing stress-responsive expression of splicing-related proteins in plant.

Authors:  Mo-Xian Chen; Long-Can Mei; Fan Wang; Iromi Kusum Wijethunge Boyagane Dewayalage; Jing-Fang Yang; Lei Dai; Guang-Fu Yang; Bei Gao; Chao-Lin Cheng; Ying-Gao Liu; Jianhua Zhang; Ge-Fei Hao
Journal:  Plant Biotechnol J       Date:  2020-10-25       Impact factor: 9.803
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