| Literature DB >> 33003963 |
Ping Lin1, Jia-Cheng Zeng1, Ji-Guang Chen1, Xu-Liang Nie2, En Yuan3, Xiao-Qiang Wang4, Da-Yong Peng2, Zhong-Ping Yin1.
Abstract
A series of novel N-alkyl-1-deoxynojirimycin derivatives 25 ∼ 44 were synthesised and evaluated for their in vitro α-glucosidase inhibitory activity to develop α-glucosidase inhibitors with high activity. All twenty compounds exhibited α-glucosidase inhibitory activity with IC50 values ranging from 30.0 ± 0.6 µM to 2000 µM as compared to standard acarbose (IC50 = 822.0 ± 1.5 µM). The most active compound 43 was ∼27-fold more active than acarbose. Kinetic study revealed that compounds 43, 40, and 34 were all competitive inhibitors on α-glucosidase with Ki of 10 µM, 52 µM, and 150 µM, respectively. Molecular docking demonstrated that the high active inhibitors interacted with α-glucosidase by four types of interactions, including hydrogen bonds, π-π stacking interactions, hydrophobic interactions, and electrostatic interaction. Among all the interactions, the π-π stacking interaction and hydrogen bond played a significant role in a various range of activities of the compounds.Entities:
Keywords: 1-Deoxynojirimycin derivatives; docking study; inhibitor; structure–activity relationship; α-glucosidase
Mesh:
Substances:
Year: 2020 PMID: 33003963 PMCID: PMC7580737 DOI: 10.1080/14756366.2020.1826941
Source DB: PubMed Journal: J Enzyme Inhib Med Chem ISSN: 1475-6366 Impact factor: 5.051
Scheme 1.Synthesis of intermediate products and target products of N-alkyl-deoxynojirimycin derivatives. Reagents and condition: (a) K2CO3, acetone, dibromo alkane, 65 °C, overnight or Et3N, acetone, dibromo alkane, 65 °C; (b) K2CO3, DMF, 85 °C, 6 h.
In vitro α-glucosidase inhibitory activity of compound 25–44.
| Compound | Structure | IC50(μM)a | Compound | Structure | IC50(μM)a |
|---|---|---|---|---|---|
| 1094.1 ± 1.80 | 966.2 ± 0.40 | ||||
| 1099.4 ± 1.10 | >2000 | ||||
| 559.3 ± 0.28 | >2000 | ||||
| 562.1 ± 0.49 | >2000 | ||||
| 976.5 ± 0.70 | >2000 | ||||
| 1272.2 ± 1.20 | 160.5 ± 0.60 | ||||
| >2000 | 571.6 ± 0.60 | ||||
| 667.0 ± 1.60 | 523.5 ± 0.10 | ||||
| 602.3 ± 1.20 | 30.0 ± 0.60 | ||||
| 417.0 ± 0.14 | 538.1 ± 0.28 | ||||
| 822.0 ± 1.50 | 222.4 ± 0.50 |
aValues are the mean ± SD. All experiments were performed at least three times.
Figure 1.The general structural formula of N-alkyl-deoxynojirimycin derivatives.
Figure 2.Kinetic analysis of α-glucosidase inhibition by compounds 43, 40, and 34. (A) The Lineweaver–Burk plots in the absence and presence of different concentrations of compound 43; (B) The Lineweaver–Burk plots in the absence and presence of different concentrations of compound 40; (C) The Lineweaver–Burk plots in the absence and presence of different concentrations of compound 34.
The detailed information of molecular docking results of compounds 34, 40, 41, 43, and acarbose.
| Compound | Interactions | Binding Sitea | Affinity(kcal/mol) |
|---|---|---|---|
| Hydrogen Bonds | His348, Asp349, Asp214, His279, Glu304, Asn241(3), His239 | −8.0 | |
| π–π Interactions | Phe300 | ||
| Hydrophobic Interactions | Phe158, Phe177, Tyr71, Phe300, Leu437 | ||
| Hydrogen Bonds | Glu276(2), Gln350, Asp349, Arg439 | −8.7 | |
| π–π Interactions | Phe300, Phe157 | ||
| Hydrophobic Interactions | Ala278, Phe157, Phe158, Phe177, Leu437, Phe311 | ||
| Electrostatic Interaction | Asp349 | ||
| Hydrogen Bonds | Glu276, Gln350, Asp349, Arg439 | −8.6 | |
| π–π Interactions | Phe300, Phe157 | ||
| Hydrophobic Interactions | Phe157, Phe177, Phe158, Ala278 | ||
| Electrostatic Interaction | Asp349 | ||
| Hydrogen Bonds | Glu276, Asp349, Arg439, His279, Glu304, Pro309(2), Arg312(2) | −9.2 | |
| π–π Interactions | Phe300, Phe157 | ||
| Hydrophobic Interactions | Leu218, Ala 278, Phe157, Phe300, Phe177, Phe158 | ||
| Electrostatic Interaction | Asp349 | ||
| Hydrogen Bonds | Gln350, Arg312, Asn241(4) | −7.8 | |
| Electrostatic Interaction | Phe157, Phe158, Phe300 |
aThe number in brackets means the number of hydrogen bonds formed with the residues.
Figure 4.The predicted binding mode of acarbose (A), 34 (B), 41 (C) and 40 (D) in the active site pocket. The yellow dashed lines represented hydrogen bonds and the red dashed lines represented π–π interactions.
Figure 3.(A) The predicted binding mode of compound 43 in the active site and substrate-binding pocket. (B) the interactions between 43 and modelled α-glucosidase. The yellow dashed lines represent hydrogen bonds and the red dashed lines represented π–π interactions.