| Literature DB >> 32997700 |
Kaveh Hajifathalian1, Reem Z Sharaiha1, Sonal Kumar1, Tibor Krisko1, Daniel Skaf2, Bryan Ang2, Walker D Redd3,4, Joyce C Zhou4, Kelly E Hathorn4,5, Thomas R McCarty4,5, Ahmad Najdat Bazarbashi4,5, Cheikh Njie3,4, Danny Wong3,4, Lin Shen4,5, Evan Sholle6, David E Cohen1, Robert S Brown1, Walter W Chan4,5, Brett E Fortune1.
Abstract
BACKGROUND: The 2019 novel coronavirus disease (COVID-19) has created unprecedented medical challenges. There remains a need for validated risk prediction models to assess short-term mortality risk among hospitalized patients with COVID-19. The objective of this study was to develop and validate a 7-day and 14-day mortality risk prediction model for patients hospitalized with COVID-19.Entities:
Mesh:
Year: 2020 PMID: 32997700 PMCID: PMC7526907 DOI: 10.1371/journal.pone.0239536
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographics, medical history, laboratory, and clinical findings of patients with COVID-19 upon admission.
| Variable | Total, n = 664 | Death within 14 days of admission | P-value | |
|---|---|---|---|---|
| No, n = 571 | Yes, n = 93 | |||
| Male | 415(63) | 357(63) | 58(62) | 0.977 |
| BMI | ||||
| Normal | 148(31) | 120(29) | 28(43) | 0.084 |
| Underweight | 18(4) | 14(3) | 4(6) | |
| Overweight | 142(30) | 124(30) | 18(28) | |
| Obese | 139(29) | 127(31) | 12(18) | |
| Morbidly obese | 32(7) | 29(7) | 3(5) | |
| Pre-existing comorbidities | ||||
| Diabetes | 206(31) | 174(30) | 32(34) | 0.447 |
| COPD/Asthma | 81(12) | 69(12) | 12(13) | 0.823 |
| Obstructive sleep apnea | 27(4) | 23(4) | 4(4) | 0.902 |
| VTE | 54(8) | 43(8) | 11(12) | 0.163 |
| Cancer | 78(12) | 62(11) | 16(17) | 0.081 |
| IBD | 8(1) | 7(1) | 1(1) | 0.902 |
| Chronic liver disease | 20(3) | 18(3) | 2(2) | 0.602 |
| Solid organ transplantation | 20(3) | 18(3) | 2(2) | 0.602 |
| Vital signs | ||||
| fever | 170(26) | 153(27) | 17(18) | 0.082 |
| Heart rate | 94±19 | 94±19 | 92±19 | 0.450 |
| Laboratory findings | ||||
| White blood cell count, x10 | 7.7±6.6 | 7.6±6.8 | 8.0±4.6 | 0.673 |
| Absolute lymphocyte count,x10 | 1.1±2.1 | 1.1±2.2 | 0.8±0.6 | 0.053 |
| Absolute neutrophil count, x10 | 7±9.2 | 6.7±9.0 | 8.3±10.6 | 0.056 |
| Albumin, g/dL | 3.3±0.6 | 3.3±0.7 | 3.2±0.6 | 0.225 |
| Total bilirubin, mg/dL | 0.7±0.5 | 0.7±0.5 | 0.7±0.5 | 0.516 |
| ALT, U/L | 49±53 | 49±51 | 46±61 | 0.021 |
| Alkaline phosphatase, U/L | 90±78 | 90±83 | 85±46 | 0.461 |
^Data are mean ± SD, or n(%).
*P-values are from a univariable logistic regression model with 14-day mortality as the outcome. The continuous variables are transformed by natural logarithm before used in regression. VTE: venous thromboembolism; IBD: inflammatory bowel disease; NSAID: non-steroidal anti-inflammatory drug; AST: aspartate aminotransferase; ALT: alanine aminotransferase; INR: international normalized ratio; aPTT: activated partial thromboplastin time.
**Kidney dysfunction, defined as serum creatinine at admission ≥ 2 mg/dL
Fig 1Flowchart of the populations used to build and externally validate mortality prediction models.
Fig 2Optimal decision tree for categorizing patients admitted for COVID-19 based on the most informative predictors of 14-day mortality.
Risk prediction model for mortality risk for patients admitted with COVID-19, developed using the training data set.
| 7-day mortality | 14-day mortality | ||||
|---|---|---|---|---|---|
| Risk factor | Coefficient | Standard error | Risk factor | Coefficient | Standard error |
| Loge(age) | 7.8913 | 1.2109 | Loge(age) | 6.4001 | 0.8852 |
| Loge(MAP) | -1.5434 | 0.9283 | Loge(MAP) | -1.2073 | 0.7999 |
| Kidney dysfunction | 1.0738 | 0.3445 | Kidney dysfunction | 1.0281 | 0.3038 |
| Severe hypoxia | 0.9385 | 0.3087 | Severe hypoxia | 0.7977 | 0.26 |
| Intercept | -29.8233 | 7.1248 | Intercept | -24.17 | 5.5901 |
*Kidney dysfunction, defined as serum creatinine at admission ≥ 2 mg/dL
Fig 3Discrimination and calibration of prediction models in internal validation.
a) 7-day mortality: Receiver operator characteristic (ROC) curve for discrimination. Area under the curve (AUC) = 0.877 (95%CI 0.831–0.923). b) 7-day mortality: Calibration plot of observed versus predicted risk of mortality (Hosmer-Lemeshow chi-squared = 9.10, p = 0.334; DF = 8). c) 14-day mortality: Receiver operator characteristic (ROC) curve for discrimination. Area under the curve (AUC) = 0.847 (95%CI 0.806–0.888). d) 14-day mortality: Calibration plot of observed versus predicted risk of mortality (Hosmer-Lemeshow chi-squared = 9.64, p = 0.291; DF = 8).
Fig 4Discrimination and calibration of prediction models in external validation.
a) 7-day mortality: Receiver operator characteristic (ROC) curve for discrimination. Area under the curve (AUC) = 0.851 (95%CI 0.781–0.921). b) 7-day mortality: Calibration plot of observed versus predicted risk of mortality (Hosmer-Lemeshow chi-squared = 9.03, p = 0.340; DF = 8). c) 14-day mortality: Receiver operator characteristic (ROC) curve for discrimination. Area under the curve (AUC) = 0.825 (95%CI 0.764–0.887). d) 14-day mortality: Calibration plot of observed versus predicted risk of mortality (Hosmer-Lemeshow chi-squared = 7.63, p = 0.471; DF = 8).