Literature DB >> 32995751

Attention-Based Network for Weak Labels in Neonatal Seizure Detection.

Dmitry Yu Isaev1, Dmitry Tchapyjnikov2, C Michael Cotten3, David Tanaka3, Natalia Martinez4, Martin Bertran4, Guillermo Sapiro4, David Carlson5.   

Abstract

Seizures are a common emergency in the neonatal intesive care unit (NICU) among newborns receiving therapeutic hypothermia for hypoxic ischemic encephalopathy. The high incidence of seizures in this patient population necessitates continuous electroencephalographic (EEG) monitoring to detect and treat them. Due to EEG recordings being reviewed intermittently throughout the day, inevitable delays to seizure identification and treatment arise. In recent years, work on neonatal seizure detection using deep learning algorithms has started gaining momentum. These algorithms face numerous challenges: first, the training data for such algorithms comes from individual patients, each with varying levels of label imbalance since the seizure burden in NICU patients differs by several orders of magnitude. Second, seizures in neonates are usually localized in a subset of EEG channels, and performing annotations per channel is very time-consuming. Hence models which make use of labels only per time periods, and not per channels, are preferable. In this work we assess how different deep learning models and data balancing methods influence learning in neonatal seizure detection in EEGs. We propose a model which provides a level of importance to each of the EEG channels - a proxy to whether a channel exhibits seizure activity or not, and we provide a quantitative assessment of how well this mechanism works. The model is portable to EEG devices with differing layouts without retraining, facilitating its potential deployment across different medical centers. We also provide a first assessment of how a deep learning model for neonatal seizure detection agrees with human rater decisions - an important milestone for deployment to clinical practice. We show that high AUC values in a deep learning model do not necessarily correspond to agreement with a human expert, and there is still a need to further refine such algorithms for optimal seizure discrimination.

Entities:  

Year:  2020        PMID: 32995751      PMCID: PMC7521836     

Source DB:  PubMed          Journal:  Proc Mach Learn Res


  32 in total

1.  Predicting Hospital Readmission via Cost-Sensitive Deep Learning.

Authors:  Haishuai Wang; Zhicheng Cui; Yixin Chen; Michael Avidan; Arbi Ben Abdallah; Alexander Kronzer
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-04-16       Impact factor: 3.710

2.  Guideline thirteen: guidelines for standard electrode position nomenclature. American Electroencephalographic Society.

Authors: 
Journal:  J Clin Neurophysiol       Date:  1994-01       Impact factor: 2.177

3.  Robust neonatal EEG seizure detection through adaptive background modeling.

Authors:  Andriy Temko; Geraldine Boylan; William Marnane; Gordon Lightbody
Journal:  Int J Neural Syst       Date:  2013-06-04       Impact factor: 5.866

4.  Use of EEG monitoring and management of non-convulsive seizures in critically ill patients: a survey of neurologists.

Authors:  Nicholas S Abend; Dennis J Dlugos; Cecil D Hahn; Lawrence J Hirsch; Susan T Herman
Journal:  Neurocrit Care       Date:  2010-06       Impact factor: 3.210

5.  Video-EEG monitoring in newborns with hypoxic-ischemic encephalopathy treated with hypothermia.

Authors:  K B Nash; S L Bonifacio; H C Glass; J E Sullivan; A J Barkovich; D M Ferriero; M R Cilio
Journal:  Neurology       Date:  2011-02-08       Impact factor: 9.910

6.  Stop Explaining Black Box Machine Learning Models for High Stakes Decisions and Use Interpretable Models Instead.

Authors:  Cynthia Rudin
Journal:  Nat Mach Intell       Date:  2019-05-13

7.  Prognostic factors of developmental outcome in neonatal seizures in term infants.

Authors:  Yin-Hsuan Lai; Che-Sheng Ho; Nan-Chang Chiu; Chih-Fan Tseng; Yuan-Ling Huang
Journal:  Pediatr Neonatol       Date:  2013-02-17       Impact factor: 2.083

8.  Time-Varying EEG Correlations Improve Automated Neonatal Seizure Detection.

Authors:  Karoliina T Tapani; Sampsa Vanhatalo; Nathan J Stevenson
Journal:  Int J Neural Syst       Date:  2018-06-24       Impact factor: 5.866

9.  A dataset of neonatal EEG recordings with seizure annotations.

Authors:  N J Stevenson; K Tapani; L Lauronen; S Vanhatalo
Journal:  Sci Data       Date:  2019-03-05       Impact factor: 6.444

10.  In-depth performance analysis of an EEG based neonatal seizure detection algorithm.

Authors:  S Mathieson; J Rennie; V Livingstone; A Temko; E Low; R M Pressler; G B Boylan
Journal:  Clin Neurophysiol       Date:  2016-02-21       Impact factor: 3.708

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  3 in total

1.  Ensemble Learning Using Individual Neonatal Data for Seizure Detection.

Authors:  Ana Borovac; Steinn Gudmundsson; Gardar Thorvardsson; Saeed M Moghadam; Paivi Nevalainen; Nathan Stevenson; Sampsa Vanhatalo; Thomas P Runarsson
Journal:  IEEE J Transl Eng Health Med       Date:  2022-08-23

2.  Deep Convolutional Gated Recurrent Unit Combined with Attention Mechanism to Classify Pre-Ictal from Interictal EEG with Minimized Number of Channels.

Authors:  WooHyeok Choi; Min-Jee Kim; Mi-Sun Yum; Dong-Hwa Jeong
Journal:  J Pers Med       Date:  2022-05-09

3.  A deep learning framework for epileptic seizure detection based on neonatal EEG signals.

Authors:  Artur Gramacki; Jarosław Gramacki
Journal:  Sci Rep       Date:  2022-07-29       Impact factor: 4.996

  3 in total

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