Literature DB >> 32988995

Using Drosophila to drive the diagnosis and understand the mechanisms of rare human diseases.

Nichole Link1,2,3, Hugo J Bellen4,2,3.   

Abstract

Next-generation sequencing has greatly accelerated the discovery of rare human genetic diseases. Nearly 45% of patients have variants associated with known diseases but the unsolved cases remain a conundrum. Moreover, causative mutations can be difficult to pinpoint because variants frequently map to genes with no previous disease associations and, often, only one or a few patients with variants in the same gene are identified. Model organisms, such as Drosophila, can help to identify and characterize these new disease-causing genes. Importantly, Drosophila allow quick and sophisticated genetic manipulations, permit functional testing of human variants, enable the characterization of pathogenic mechanisms and are amenable to drug tests. In this Spotlight, focusing on microcephaly as a case study, we highlight how studies of human genes in Drosophila have aided our understanding of human genetic disorders, allowing the identification of new genes in well-established signaling pathways.
© 2020. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Ankle2; Asymmetric division; Drosophila; Microcephaly; Model of human disease

Mesh:

Year:  2020        PMID: 32988995      PMCID: PMC7541339          DOI: 10.1242/dev.191411

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  85 in total

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Authors:  Tamar Harel; Wan Hee Yoon; Caterina Garone; Shen Gu; Zeynep Coban-Akdemir; Mohammad K Eldomery; Jennifer E Posey; Shalini N Jhangiani; Jill A Rosenfeld; Megan T Cho; Stephanie Fox; Marjorie Withers; Stephanie M Brooks; Theodore Chiang; Lita Duraine; Serkan Erdin; Bo Yuan; Yunru Shao; Elie Moussallem; Costanza Lamperti; Maria A Donati; Joshua D Smith; Heather M McLaughlin; Christine M Eng; Magdalena Walkiewicz; Fan Xia; Tommaso Pippucci; Pamela Magini; Marco Seri; Massimo Zeviani; Michio Hirano; Jill V Hunter; Myriam Srour; Stefano Zanigni; Richard Alan Lewis; Donna M Muzny; Timothy E Lotze; Eric Boerwinkle; Richard A Gibbs; Scott E Hickey; Brett H Graham; Yaping Yang; Daniela Buhas; Donna M Martin; Lorraine Potocki; Claudio Graziano; Hugo J Bellen; James R Lupski
Journal:  Am J Hum Genet       Date:  2016-09-15       Impact factor: 11.025

2.  Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis.

Authors:  Priya S Shah; Nichole Link; Gwendolyn M Jang; Phillip P Sharp; Tongtong Zhu; Danielle L Swaney; Jeffrey R Johnson; John Von Dollen; Holly R Ramage; Laura Satkamp; Billy Newton; Ruth Hüttenhain; Marine J Petit; Tierney Baum; Amanda Everitt; Orly Laufman; Michel Tassetto; Michael Shales; Erica Stevenson; Gabriel N Iglesias; Leila Shokat; Shashank Tripathi; Vinod Balasubramaniam; Laurence G Webb; Sebastian Aguirre; A Jeremy Willsey; Adolfo Garcia-Sastre; Katherine S Pollard; Sara Cherry; Andrea V Gamarnik; Ivan Marazzi; Jack Taunton; Ana Fernandez-Sesma; Hugo J Bellen; Raul Andino; Nevan J Krogan
Journal:  Cell       Date:  2018-12-13       Impact factor: 41.582

3.  Mendelian Gene Discovery: Fast and Furious with No End in Sight.

Authors:  Michael J Bamshad; Deborah A Nickerson; Jessica X Chong
Journal:  Am J Hum Genet       Date:  2019-09-05       Impact factor: 11.025

Review 4.  The role of large pedigrees in an era of high-throughput sequencing.

Authors:  Ellen M Wijsman
Journal:  Hum Genet       Date:  2012-06-20       Impact factor: 4.132

5.  Plug-and-play genetic access to drosophila cell types using exchangeable exon cassettes.

Authors:  Fengqiu Diao; Holly Ironfield; Haojiang Luan; Feici Diao; William C Shropshire; John Ewer; Elizabeth Marr; Christopher J Potter; Matthias Landgraf; Benjamin H White
Journal:  Cell Rep       Date:  2015-02-26       Impact factor: 9.423

6.  Reanalysis of Clinical Exome Sequencing Data.

Authors:  Pengfei Liu; Linyan Meng; Elizabeth A Normand; Fan Xia; Xiaofei Song; Andrew Ghazi; Jill Rosenfeld; Pilar L Magoulas; Alicia Braxton; Patricia Ward; Hongzheng Dai; Bo Yuan; Weimin Bi; Rui Xiao; Xia Wang; Theodore Chiang; Francesco Vetrini; Weimin He; Hanyin Cheng; Jie Dong; Charul Gijavanekar; Paul J Benke; Jonathan A Bernstein; Tanya Eble; Yasemen Eroglu; Deanna Erwin; Luis Escobar; James B Gibson; Karen Gripp; Soledad Kleppe; Mary K Koenig; Andrea M Lewis; Marvin Natowicz; Pedro Mancias; LaKeesha Minor; Fernando Scaglia; Christian P Schaaf; Haley Streff; Hilary Vernon; Crescenda L Uhles; Elaine H Zackai; Nan Wu; V Reid Sutton; Arthur L Beaudet; Donna Muzny; Richard A Gibbs; Jennifer E Posey; Seema Lalani; Chad Shaw; Christine M Eng; James R Lupski; Yaping Yang
Journal:  N Engl J Med       Date:  2019-06-20       Impact factor: 91.245

7.  Phospholipase PLA2G6, a Parkinsonism-Associated Gene, Affects Vps26 and Vps35, Retromer Function, and Ceramide Levels, Similar to α-Synuclein Gain.

Authors:  Guang Lin; Pei-Tseng Lee; Kuchuan Chen; Dongxue Mao; Kai Li Tan; Zhongyuan Zuo; Wen-Wen Lin; Liping Wang; Hugo J Bellen
Journal:  Cell Metab       Date:  2018-06-14       Impact factor: 27.287

8.  A drosophila genetic resource of mutants to study mechanisms underlying human genetic diseases.

Authors:  Shinya Yamamoto; Manish Jaiswal; Wu-Lin Charng; Tomasz Gambin; Ender Karaca; Ghayda Mirzaa; Wojciech Wiszniewski; Hector Sandoval; Nele A Haelterman; Bo Xiong; Ke Zhang; Vafa Bayat; Gabriela David; Tongchao Li; Kuchuan Chen; Upasana Gala; Tamar Harel; Davut Pehlivan; Samantha Penney; Lisenka E L M Vissers; Joep de Ligt; Shalini N Jhangiani; Yajing Xie; Stephen H Tsang; Yesim Parman; Merve Sivaci; Esra Battaloglu; Donna Muzny; Ying-Wooi Wan; Zhandong Liu; Alexander T Lin-Moore; Robin D Clark; Cynthia J Curry; Nichole Link; Karen L Schulze; Eric Boerwinkle; William B Dobyns; Rando Allikmets; Richard A Gibbs; Rui Chen; James R Lupski; Michael F Wangler; Hugo J Bellen
Journal:  Cell       Date:  2014-09-25       Impact factor: 66.850

Review 9.  Model Organisms Facilitate Rare Disease Diagnosis and Therapeutic Research.

Authors:  Michael F Wangler; Shinya Yamamoto; Hsiao-Tuan Chao; Jennifer E Posey; Monte Westerfield; John Postlethwait; Philip Hieter; Kym M Boycott; Philippe M Campeau; Hugo J Bellen
Journal:  Genetics       Date:  2017-09       Impact factor: 4.562

Review 10.  Gene Tagging Strategies To Assess Protein Expression, Localization, and Function in Drosophila.

Authors:  Oguz Kanca; Hugo J Bellen; Frank Schnorrer
Journal:  Genetics       Date:  2017-10       Impact factor: 4.562

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  10 in total

Review 1.  'Fly-ing' from rare to common neurodegenerative disease mechanisms.

Authors:  Mengqi Ma; Matthew J Moulton; Shenzhao Lu; Hugo J Bellen
Journal:  Trends Genet       Date:  2022-04-25       Impact factor: 11.821

2.  Multiplexed drug-based selection and counterselection genetic manipulations in Drosophila.

Authors:  Nick Matinyan; Mansi S Karkhanis; Yezabel Gonzalez; Antrix Jain; Alexander Saltzman; Anna Malovannaya; Alejandro Sarrion-Perdigones; Herman A Dierick; Koen J T Venken
Journal:  Cell Rep       Date:  2021-09-14       Impact factor: 9.423

3.  Expression of human HIPKs in Drosophila demonstrates their shared and unique functions in a developmental model.

Authors:  Stephen D Kinsey; Justin P Vinluan; Gerald A Shipman; Esther M Verheyen
Journal:  G3 (Bethesda)       Date:  2021-12-08       Impact factor: 3.154

4.  Drosophila carrying epilepsy-associated variants in the vitamin B6 metabolism gene PNPO display allele- and diet-dependent phenotypes.

Authors:  Wanhao Chi; Atulya S R Iyengar; Wenqin Fu; Wei Liu; Abigayle E Berg; Chun-Fang Wu; Xiaoxi Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 11.205

Review 5.  Inter-Species Rescue of Mutant Phenotype-The Standard for Genetic Analysis of Human Genetic Disorders in Drosophila melanogaster Model.

Authors:  Alexandru Al Ecovoiu; Attila Cristian Ratiu; Miruna Mihaela Micheu; Mariana Carmen Chifiriuc
Journal:  Int J Mol Sci       Date:  2022-02-27       Impact factor: 5.923

6.  Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases.

Authors:  Paul C Marcogliese; Samantha L Deal; Jonathan Andrews; J Michael Harnish; V Hemanjani Bhavana; Hillary K Graves; Sharayu Jangam; Xi Luo; Ning Liu; Danqing Bei; Yu-Hsin Chao; Brooke Hull; Pei-Tseng Lee; Hongling Pan; Pradnya Bhadane; Mei-Chu Huang; Colleen M Longley; Hsiao-Tuan Chao; Hyung-Lok Chung; Nele A Haelterman; Oguz Kanca; Sathiya N Manivannan; Linda Z Rossetti; Ryan J German; Amanda Gerard; Eva Maria Christina Schwaibold; Sarah Fehr; Renzo Guerrini; Annalisa Vetro; Eleina England; Chaya N Murali; Tahsin Stefan Barakat; Marieke F van Dooren; Martina Wilke; Marjon van Slegtenhorst; Gaetan Lesca; Isabelle Sabatier; Nicolas Chatron; Catherine A Brownstein; Jill A Madden; Pankaj B Agrawal; Boris Keren; Thomas Courtin; Laurence Perrin; Melanie Brugger; Timo Roser; Steffen Leiz; Frederic Tran Mau-Them; Julian Delanne; Elena Sukarova-Angelovska; Slavica Trajkova; Erik Rosenhahn; Vincent Strehlow; Konrad Platzer; Roberto Keller; Lisa Pavinato; Alfredo Brusco; Jill A Rosenfeld; Ronit Marom; Michael F Wangler; Shinya Yamamoto
Journal:  Cell Rep       Date:  2022-03-15       Impact factor: 9.423

7.  Effects of Chlorophyll a and b in Reducing Genotoxicity of 2-Amino-3,8-dimethylimidazo[4,5-F]quinoxaline (MeIQx).

Authors:  Serap Kocaoğlu Cenkci; Bülent Kaya
Journal:  Biology (Basel)       Date:  2022-04-15

8.  ANKLE2-related microcephaly: A variable microcephaly syndrome resembling Zika infection.

Authors:  Ajay X Thomas; Nichole Link; Laurie A Robak; Gail Demmler-Harrison; Emily C Pao; Audrey E Squire; Savannah Michels; Julie S Cohen; Anne Comi; Paolo Prontera; Alberto Verrotti di Pianella; Giuseppe Di Cara; Livia Garavelli; Stefano Giuseppe Caraffi; Carlo Fusco; Roberta Zuntini; Kendall C Parks; Elliott H Sherr; Mais O Hashem; Sateesh Maddirevula; Fowzan S Alkuraya; Isphana A F Contractar; Jennifer E Neil; Christopher A Walsh; Hugo J Bellen; Hsiao-Tuan Chao; Robin D Clark; Ghayda M Mirzaa
Journal:  Ann Clin Transl Neurol       Date:  2022-07-24       Impact factor: 5.430

Review 9.  The Green Valley of Drosophila melanogaster Constitutive Heterochromatin: Protein-Coding Genes Involved in Cell Division Control.

Authors:  Giovanni Messina; Yuri Prozzillo; Greta Bizzochi; Renè Massimiliano Marsano; Patrizio Dimitri
Journal:  Cells       Date:  2022-09-29       Impact factor: 7.666

10.  Precision Medicine on the Fly: Using Drosophila to Decipher Gene-Environment Interactions in Parkinson's Disease.

Authors:  Souvarish Sarkar; Mel B Feany
Journal:  Toxicol Sci       Date:  2021-08-03       Impact factor: 4.109

  10 in total

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