Literature DB >> 25259927

A drosophila genetic resource of mutants to study mechanisms underlying human genetic diseases.

Shinya Yamamoto1, Manish Jaiswal2, Wu-Lin Charng3, Tomasz Gambin4, Ender Karaca5, Ghayda Mirzaa6, Wojciech Wiszniewski7, Hector Sandoval5, Nele A Haelterman8, Bo Xiong8, Ke Zhang9, Vafa Bayat8, Gabriela David8, Tongchao Li8, Kuchuan Chen8, Upasana Gala8, Tamar Harel7, Davut Pehlivan5, Samantha Penney7, Lisenka E L M Vissers10, Joep de Ligt10, Shalini N Jhangiani11, Yajing Xie12, Stephen H Tsang13, Yesim Parman14, Merve Sivaci15, Esra Battaloglu15, Donna Muzny16, Ying-Wooi Wan17, Zhandong Liu18, Alexander T Lin-Moore5, Robin D Clark19, Cynthia J Curry20, Nichole Link5, Karen L Schulze2, Eric Boerwinkle21, William B Dobyns22, Rando Allikmets13, Richard A Gibbs16, Rui Chen23, James R Lupski24, Michael F Wangler25, Hugo J Bellen26.   

Abstract

Invertebrate model systems are powerful tools for studying human disease owing to their genetic tractability and ease of screening. We conducted a mosaic genetic screen of lethal mutations on the Drosophila X chromosome to identify genes required for the development, function, and maintenance of the nervous system. We identified 165 genes, most of whose function has not been studied in vivo. In parallel, we investigated rare variant alleles in 1,929 human exomes from families with unsolved Mendelian disease. Genes that are essential in flies and have multiple human homologs were found to be likely to be associated with human diseases. Merging the human data sets with the fly genes allowed us to identify disease-associated mutations in six families and to provide insights into microcephaly associated with brain dysgenesis. This bidirectional synergism between fly genetics and human genomics facilitates the functional annotation of evolutionarily conserved genes involved in human health.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25259927      PMCID: PMC4298142          DOI: 10.1016/j.cell.2014.09.002

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  47 in total

1.  Clan genomics and the complex architecture of human disease.

Authors:  James R Lupski; John W Belmont; Eric Boerwinkle; Richard A Gibbs
Journal:  Cell       Date:  2011-09-30       Impact factor: 41.582

2.  A new resource for characterizing X-linked genes in Drosophila melanogaster: systematic coverage and subdivision of the X chromosome with nested, Y-linked duplications.

Authors:  R Kimberley Cook; Megan E Deal; Jennifer A Deal; Russell D Garton; C Adam Brown; Megan E Ward; Rachel S Andrade; Eric P Spana; Thomas C Kaufman; Kevin R Cook
Journal:  Genetics       Date:  2010-09-27       Impact factor: 4.562

3.  Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.

Authors:  Ender Karaca; Stefan Weitzer; Davut Pehlivan; Hiroshi Shiraishi; Tasos Gogakos; Toshikatsu Hanada; Shalini N Jhangiani; Wojciech Wiszniewski; Marjorie Withers; Ian M Campbell; Serkan Erdin; Sedat Isikay; Luis M Franco; Claudia Gonzaga-Jauregui; Tomasz Gambin; Violet Gelowani; Jill V Hunter; Gozde Yesil; Erkan Koparir; Sarenur Yilmaz; Miguel Brown; Daniel Briskin; Markus Hafner; Pavel Morozov; Thalia A Farazi; Christian Bernreuther; Markus Glatzel; Siegfried Trattnig; Joachim Friske; Claudia Kronnerwetter; Matthew N Bainbridge; Alper Gezdirici; Mehmet Seven; Donna M Muzny; Eric Boerwinkle; Mustafa Ozen; Tim Clausen; Thomas Tuschl; Adnan Yuksel; Andreas Hess; Richard A Gibbs; Javier Martinez; Josef M Penninger; James R Lupski
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

4.  Sec15, a component of the exocyst, promotes notch signaling during the asymmetric division of Drosophila sensory organ precursors.

Authors:  Hamed Jafar-Nejad; Hillary K Andrews; Melih Acar; Vafa Bayat; Frederik Wirtz-Peitz; Sunil Q Mehta; Juergen A Knoblich; Hugo J Bellen
Journal:  Dev Cell       Date:  2005-09       Impact factor: 12.270

5.  Mutations affecting segment number and polarity in Drosophila.

Authors:  C Nüsslein-Volhard; E Wieschaus
Journal:  Nature       Date:  1980-10-30       Impact factor: 49.962

Review 6.  Probing mechanisms that underlie human neurodegenerative diseases in Drosophila.

Authors:  M Jaiswal; H Sandoval; K Zhang; V Bayat; H J Bellen
Journal:  Annu Rev Genet       Date:  2012-09-04       Impact factor: 16.830

7.  dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions.

Authors:  Xiaoming Liu; Xueqiu Jian; Eric Boerwinkle
Journal:  Hum Mutat       Date:  2011-08       Impact factor: 4.878

8.  Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy.

Authors:  James R Lupski; Claudia Gonzaga-Jauregui; Yaping Yang; Matthew N Bainbridge; Shalini Jhangiani; Christian J Buhay; Christie L Kovar; Min Wang; Alicia C Hawes; Jeffrey G Reid; Christine Eng; Donna M Muzny; Richard A Gibbs
Journal:  Genome Med       Date:  2013-06-27       Impact factor: 11.117

9.  PhenoDB: a new web-based tool for the collection, storage, and analysis of phenotypic features.

Authors:  Ada Hamosh; Nara Sobreira; Julie Hoover-Fong; V Reid Sutton; Corinne Boehm; François Schiettecatte; David Valle
Journal:  Hum Mutat       Date:  2013-03-04       Impact factor: 4.878

10.  Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes.

Authors:  Jacqueline K White; Anna-Karin Gerdin; Natasha A Karp; Ed Ryder; Marija Buljan; James N Bussell; Jennifer Salisbury; Simon Clare; Neil J Ingham; Christine Podrini; Richard Houghton; Jeanne Estabel; Joanna R Bottomley; David G Melvin; David Sunter; Niels C Adams; David Tannahill; Darren W Logan; Daniel G Macarthur; Jonathan Flint; Vinit B Mahajan; Stephen H Tsang; Ian Smyth; Fiona M Watt; William C Skarnes; Gordon Dougan; David J Adams; Ramiro Ramirez-Solis; Allan Bradley; Karen P Steel
Journal:  Cell       Date:  2013-07-18       Impact factor: 41.582

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  167 in total

1.  The Genomics of Arthrogryposis, a Complex Trait: Candidate Genes and Further Evidence for Oligogenic Inheritance.

Authors:  Davut Pehlivan; Yavuz Bayram; Nilay Gunes; Zeynep Coban Akdemir; Anju Shukla; Tatjana Bierhals; Burcu Tabakci; Yavuz Sahin; Alper Gezdirici; Jawid M Fatih; Elif Yilmaz Gulec; Gozde Yesil; Jaya Punetha; Zeynep Ocak; Christopher M Grochowski; Ender Karaca; Hatice Mutlu Albayrak; Periyasamy Radhakrishnan; Haktan Bagis Erdem; Ibrahim Sahin; Timur Yildirim; Ilhan A Bayhan; Aysegul Bursali; Muhsin Elmas; Zafer Yuksel; Ozturk Ozdemir; Fatma Silan; Onur Yildiz; Osman Yesilbas; Sedat Isikay; Burhan Balta; Shen Gu; Shalini N Jhangiani; Harsha Doddapaneni; Jianhong Hu; Donna M Muzny; Eric Boerwinkle; Richard A Gibbs; Konstantinos Tsiakas; Maja Hempel; Katta Mohan Girisha; Davut Gul; Jennifer E Posey; Nursel H Elcioglu; Beyhan Tuysuz; James R Lupski
Journal:  Am J Hum Genet       Date:  2019-06-20       Impact factor: 11.025

2.  Miles to go (mtgo) encodes FNDC3 proteins that interact with the chaperonin subunit CCT3 and are required for NMJ branching and growth in Drosophila.

Authors:  Adeela Syed; Tamás Lukacsovich; Miles Pomeroy; A Jane Bardwell; Gentry Thomas Decker; Katrina G Waymire; Judith Purcell; Weijian Huang; James Gui; Emily M Padilla; Cindy Park; Antor Paul; Thai Bin T Pham; Yanete Rodriguez; Stephen Wei; Shane Worthge; Ronak Zebarjedi; Bing Zhang; Lee Bardwell; J Lawrence Marsh; Grant R MacGregor
Journal:  Dev Biol       Date:  2018-10-25       Impact factor: 3.582

3.  Dosage changes of a segment at 17p13.1 lead to intellectual disability and microcephaly as a result of complex genetic interaction of multiple genes.

Authors:  Claudia M B Carvalho; Shivakumar Vasanth; Marwan Shinawi; Chad Russell; Melissa B Ramocki; Chester W Brown; Jesper Graakjaer; Anne-Bine Skytte; Angela M Vianna-Morgante; Ana C V Krepischi; Gayle S Patel; LaDonna Immken; Kyrieckos Aleck; Cynthia Lim; Sau Wai Cheung; Carla Rosenberg; Nicholas Katsanis; James R Lupski
Journal:  Am J Hum Genet       Date:  2014-11-06       Impact factor: 11.025

4.  Flies give wings to human disease studies.

Authors:  Vesna Todorovic
Journal:  Nat Methods       Date:  2014-12       Impact factor: 28.547

5.  Flies With Skin Blisters.

Authors:  Matias Simons
Journal:  J Invest Dermatol       Date:  2015-08       Impact factor: 8.551

6.  Paralog Studies Augment Gene Discovery: DDX and DHX Genes.

Authors:  Ingrid Paine; Jennifer E Posey; Christopher M Grochowski; Shalini N Jhangiani; Sarah Rosenheck; Robert Kleyner; Taylor Marmorale; Margaret Yoon; Kai Wang; Reid Robison; Gerarda Cappuccio; Michele Pinelli; Adriano Magli; Zeynep Coban Akdemir; Joannie Hui; Wai Lan Yeung; Bibiana K Y Wong; Lucia Ortega; Mir Reza Bekheirnia; Tatjana Bierhals; Maja Hempel; Jessika Johannsen; René Santer; Dilek Aktas; Mehmet Alikasifoglu; Sevcan Bozdogan; Hatip Aydin; Ender Karaca; Yavuz Bayram; Hadas Ityel; Michael Dorschner; Janson J White; Ekkehard Wilichowski; Saskia B Wortmann; Erasmo B Casella; Joao Paulo Kitajima; Fernando Kok; Fabiola Monteiro; Donna M Muzny; Michael Bamshad; Richard A Gibbs; V Reid Sutton; Hilde Van Esch; Nicola Brunetti-Pierri; Friedhelm Hildebrandt; Ariel Brautbar; Ignatia B Van den Veyver; Ian Glass; Davor Lessel; Gholson J Lyon; James R Lupski
Journal:  Am J Hum Genet       Date:  2019-06-27       Impact factor: 11.025

7.  Molecular basis for efficacy of Guduchi and Madhuyashti feeding on different environmental stressors in Drosophila.

Authors:  Surabhi Singh; Madhu G Tapadia
Journal:  Cell Stress Chaperones       Date:  2019-03-27       Impact factor: 3.667

Review 8.  Integration of Drosophila and Human Genetics to Understand Notch Signaling Related Diseases.

Authors:  Jose L Salazar; Shinya Yamamoto
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

9.  Xio is a component of the Drosophila sex determination pathway and RNA N6-methyladenosine methyltransferase complex.

Authors:  Jian Guo; Hong-Wen Tang; Jing Li; Norbert Perrimon; Dong Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-19       Impact factor: 11.205

10.  Mitochondrial protein import regulates cytosolic protein homeostasis and neuronal integrity.

Authors:  Wei Liu; Xiuying Duan; Xuefei Fang; Weina Shang; Chao Tong
Journal:  Autophagy       Date:  2018-07-21       Impact factor: 16.016

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