Shuhui Chen1, Brian Kasper1, Bin Zhang2, Lauren P Lashua3, Ted M Ross4, Elodie Ghedin3,5, Lara K Mahal1,6. 1. Biomedical Research Institute, Department of Chemistry, New York University, New York, New York 10003, United States. 2. Department of Genetics and Genomic Sciences, Mount Sinai Center for Transformative Disease Modeling, Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States. 3. Center for Genomics & Systems Biology, Department of Biology, New York University, New York, New York 10003, United States. 4. Center for Vaccines and Immunology, University of Georgia, Athens, Georgia 30602, United States. 5. Systems Genomics Section, Laboratory of Parasitic Diseases, NIAID/NIH, Bethesda, Maryland 20894, United States. 6. Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
Abstract
Influenza A viruses cause a spectrum of responses, from mild coldlike symptoms to severe respiratory illness and death. Intrinsic host factors, such as age, can influence disease severity. Glycosylation plays a critical role in influenza pathogenesis; however, the molecular drivers of influenza outcomes remain unknown. In this work, we characterized the host glycomic response to the H1N1 2009 pandemic influenza A virus (H1N1pdm09) as a function of age-dependent severity in a ferret model. Using our dual-color lectin microarray technology, we examined baseline glycosylation and glycomic response to infection in newly weaned and aged animals, models for young children and the elderly, respectively. Compared to adult uninfected ferrets, we observed higher levels of α-2,6-sialosides, the receptor for H1N1pdm09, in newly weaned and aged animals. We also observed age-dependent loss of O-linked α-2,3-sialosides. The loss of these highly charged groups may impact viral clearance by mucins, which corresponds to the lower clearance rates observed in aged animals. Upon infection, we observed dramatic changes in the glycomes of aged animals, a population severely impacted by the virus. In contrast, no significant alterations were observed in the newly weaned animals, which show mild to moderate responses to the H1N1pdm09. High mannose, a glycan recently identified as a marker of severity in adult animals, increased with severity in the aged population. However, the response was delayed, in line with the delayed development of pneumonia observed. Overall, our results may help explain the differential susceptibility to influenza A infection and severity observed as a function of age.
Influenza A viruses cause a spectrum of responses, from mild coldlike symptoms to severe respiratory illness and death. Intrinsic host factors, such as age, can influence disease severity. Glycosylation plays a critical role in influenza pathogenesis; however, the molecular drivers of influenza outcomes remain unknown. In this work, we characterized the host glycomic response to the H1N1 2009 pandemic influenza A virus (H1N1pdm09) as a function of age-dependent severity in a ferret model. Using our dual-color lectin microarray technology, we examined baseline glycosylation and glycomic response to infection in newly weaned and aged animals, models for young children and the elderly, respectively. Compared to adult uninfected ferrets, we observed higher levels of α-2,6-sialosides, the receptor for H1N1pdm09, in newly weaned and aged animals. We also observed age-dependent loss of O-linked α-2,3-sialosides. The loss of these highly charged groups may impact viral clearance by mucins, which corresponds to the lower clearance rates observed in aged animals. Upon infection, we observed dramatic changes in the glycomes of aged animals, a population severely impacted by the virus. In contrast, no significant alterations were observed in the newly weaned animals, which show mild to moderate responses to the H1N1pdm09. High mannose, a glycan recently identified as a marker of severity in adult animals, increased with severity in the aged population. However, the response was delayed, in line with the delayed development of pneumonia observed. Overall, our results may help explain the differential susceptibility to influenzaA infection and severity observed as a function of age.
Entities:
Keywords:
H1N1; glycomics; high mannose; influenza; lectin array; lectin microarray
Influenza A viruses
cause a spectrum of
responses from mild coldlike
symptoms to severe respiratory illness and death.[1] Both viral strain and intrinsic host factors, such as age,
influence disease severity.[2] In general,
infants, young children, and individuals older than 65 are more likely
to have severe clinical outcomes upon influenza infection. However,
during pandemic outbreaks, influenza viral strains can emerge that
shift the age-dependent infection patterns. In 2009, a novel H1N1influenza strain (H1N1pdm09) arose that caused severe clinical symptoms
more frequently in older children and adults than in young children
and the elderly.[3] Although the lower severity
observed in young children is not clearly understood, the loss of
severity observed in the elderly population was attributed to pre-existing
immunity. Prior waves of seasonal and pandemic influenza strains generated
antibodies in the older exposed population that neutralized the H1N1pdm09
virus, generating a more productive existing immunity, which lessened
severity.The ferret model of influenza mimics clinical outcomes
for the
H1N1pdm09 across the age spectrum.[4−6] Ferrets are an attractive
animal model for influenza, as they share similar lung physiology
to humans and recapitulate the pathology observed in clinical populations.
In addition, humaninfluenza viruses efficiently replicate in ferrets
without the need for adaptation, enabling study of the original viral
strains.[7] This is because ferrets contain
the receptor for humaninfluenza, α-2,6-sialic acids, in their
upper respiratory tracts. The similarities between the glycans in
the respiratory tract of ferrets to those observed in humans make
this a good model to study glycomic changes in response to influenzainfection.[8,9]Glycosylation plays an important role
in influenza infection and
host response.[10,11] Adhesion of viral hemagglutinin
(HA) to host receptors containing terminal α-2,6-sialic acids
located in the upper respiratory tract is the first step in the infection
process. Release of viral particles requires viral neuraminidases
(NA) to cleave sialic acids.[12] This enzyme
is the target of current therapeutics against influenza.[13,14] Because of the importance of HA, NA, and sialic acid in influenza
biology, the majority of glycomic analysis has focused on these molecules.In recent work, our laboratory analyzed the glycomic response to
H1N1pdm09 in an adult ferret population using our lectin microarray
technology.[15] We found that the severity
was not related to sialic acid levels but, rather, correlated with
the expression of high mannose N-glycans. Histology on ferret lungs
showed high mannose levels corresponded with alveolar severity and
was present throughout the tissue on multiple cell types. Infection
of human lung epithelia with H1N1pdm09 in cell culture recapitulated
the increased high mannose observed in ferrets. This glycan signature
was found to be cell surface and was upregulated on both viral and
host glycoproteins. Expression of high mannose was shown to be downstream
of the unfolded protein response (UPR) pathway, which has been shown
to play a role in influenza severity.[16] This glycan motif is the recognition element for a number of innate
lectins that activate the immune system. The complement-inducing lectin
MBL2, which binds high mannose, has been strongly associated with
influenza severity.[17,18] We have shown direct, high mannose-dependent
binding of MBL2 to influenzainfected cells. On the basis of our work
we hypothesize that high mannose, induced via the UPR pathway, may
play a causative role in the damage associated with MBL2 in influenza.
It is unknown whether this mechanism might underlie age-related differences
in severity.In this work, we examine glycomic changes, including
high mannose,
upon infection with the pandemic 2009 H1N1 strain of influenza in
ferret models of young children and the elderly. Since their introduction
in 2005,[19] lectin microarrays have been
used to perform glycomic analysis on a wide variety of samples from
microvesicles[20] to human tissues.[21] Herein, we analyze the glycomic response to
H1N1pdm09 infection in newly weaned and aged ferrets using our dual-color
lectin microarray technology.[22] We also
compare the baseline glycomes of newly weaned, adult, and aged ferrets.
Our data suggest that differences in the glycome, in particular, in
the high mannose response, may help explain in part the variation
in clinical outcomes as a function of age in influenza infection.
Methods
Infection
of Ferrets with H1N1pdm09
Fitch ferrets (Mustela
putorius furo, female) were obtained from Triple
F Farms (Sayre, PA) and verified as negative for antibodies to circulating
influenza A (H1N1 and H3N2) and B viruses. Newly weaned ferrets were
defined as 6–7 weeks of age, adult ferrets as 6–12 months
of age, and aged ferrets as 5.5–7 years of age. Ferrets were
pair-housed in stainless steel cages (Shor-Line) containing Sani-Chips
laboratory animal bedding (P.J. Murphy Forest Products) and provided
with food and fresh waterad libitum. Newly weaned and adult ferrets
were administered intranasally the H1N1pdm09 virus, A/California/07/2009
(Influenza Reagents Resources (IRR), BEI Resources, the Centers for
Disease Control and Prevention) at a dose of 106 PFU. Aged
ferrets were infected at a dose of 105 PFU. The animals
were monitored daily for weight loss and disease symptoms, including
elevated temperature, low activity level, sneezing, and nasal discharge.
Animals were randomly assigned to be sacrificed at day 1, 3, 5, 8,
or 14 postinfection (DPI) or euthanized if their clinical condition
(e.g., loss of >20% body weight) required it.
Tissue Collection
Necropsies were performed to collect
lung tissue. Lungs were rinsed with coldphosphate-buffered solution
(PBS), and the right upper and lower lung lobes were removed. Each
lobe was sectioned into quadrants and snap frozen prior to preparation
for lectin microarray analysis.
Definition of Severity
Metrics
The severity of the
infection was determined for all animals studied who were sacrificed
at day 8 postinfection. We analyzed two different metrics: weight
loss and pneumonia composite score (PCS). In both cases, we determined
the cutoffs for mild, moderate, and severe by quartile, wherein mild
= Q0-Q1, moderate = Q1-Q3, and severe = Q3-Q4. Weight loss cutoffs
for adult ferrets: mild (weight loss <10.8%), moderate (weight
loss: 10.8%–16.5%), and severe (weight loss >16.5%). Cutoffs
for aged ferrets: mild (weight loss <18.3%), moderate (weight loss:
18.3%–21.9%), and severe (weight loss >21.9%). PCS cutoffs
for newly weaned ferrets: mild (PCS < 8.5), moderate (PCS: 8.5–10.5),
and severe (PCS > 10.5). For adult ferrets: mild (PCS < 8),
moderate
(PCS: 8–10), and severe (PCS > 10). For aged ferrets: mild
(PCS < 8.5), moderate (PCS: 8.5–11), and severe (PCS >
11).
Lectin Microarray
Ferret lung tissue samples were washed
with PBS supplemented with protease inhibitors cocktails (PIC) and
sonicated on ice in PBS with PIC until completely homogeneous. The
homogenized samples were then labeled with Alexa Fluor 555-NHS as
previously described.[23] The reference sample
was prepared by mixing equal amounts (by total protein) of all samples
and labeling with Alexa Fluor 647-NHS (Thermo Fisher). Supporting Information, Table S1, summarizes
the print list for each experiment. Printing, hybridization, and data
analysis were performed as previously described[24] (summarized in the Supporting Information, Table S2).
Data Availability
Data are available
at DOI: 10.7303/syn22176606.
Results and Discussion
Ferret
Lung Glycosylation Alters with Age
Clinical
outcomes and susceptibility to influenza infection vary with age.[25,26] Given the role host glycans play in influenza infection and in the
immune response, we characterized the baseline glycosylation in the
lungs of uninfected female ferrets from three age categories: newly
weaned, adult, and aged. Newly weaned ferrets were defined as those
from six to seven weeks of age. The course of H1N1pdm09 infection
in this ferret population mirrors that observed clinically in young
children, that is, a mild to moderate presentation of symptoms.[5] Adult ferrets, defined as 6–12 months
of age, have more varied responses to H1N1pdm09 infection ranging
from mild to severe, again in line with human populations.[4] In aged ferrets, defined as 5.5–7 years
of age, severe outcomes are seen in more than 50% of animals infected
with H1N1pdm09.[6] This is in line with the
higher severity seen in aged populations from influenzaA infections
in general.[29,30] However, it does not match clinical
observations in the aged human population for the H1N1pdm09 strain.
This difference is accounted for by pre-existing immunity in the aged
human population. Infection by earlier pandemic-like H1N1 viruses
is thought to have elicited cross-reactive antibodies that neutralized
the virus, moderating the severity of H1N1pdm09 in the older population.[27,28] In contrast, the aged ferrets in our study are a naïve population
with no pre-exposure to influenza. Thus, we observe the more severe
influenza response typical of influenzaA infections in the elderly
with no preimmunity.We analyzed the baseline expression level
of host glycans prior to influenzavirus infection in lung punch biopsies
from newly weaned (NW, n = 6), adult (AD, n = 4), and aged ferrets (AG, n = 3) using
our dual-color lectin microarray technology (Scheme ).[22,23] Biopsies from both
the upper and lower lobes were analyzed for each ferret. Lectin microarrays
utilize carbohydrate-binding proteins with well-defined specificities
to detect glycan changes between samples.[19,22−24] In brief, frozen tissue samples were sonicated and
labeled with either Alexa Fluor 555-NHS (sample) or Alexa Fluor 647-NHS
(reference). A pooled reference consisting of all the samples was
used. Equal amounts of sample and reference were analyzed on the lectin
microarrays (>100 probes, Supporting Information, Table S1). A heatmap of the normalized data, ordered by ferretage, is shown in Figure a.
Scheme 1
Workflow of Sample Preparation for Dual-Color Lectin Microarray
Analysis
(a) Lungs were harvested from
ferrets infected with H1N1pdm09 and from uninfected control ferrets.
(b) Glycoproteins were isolated from tissues. (c) Glycoproteins were
labeled with Alexa Fluor 555-NHS. A pooled reference sample was orthogonally
labeled with Alexa Fluor 647-NHS. (d) Equal amounts of sample and
reference were mixed and hybridized on lectin microarrays. (e) Lectin
microarrays were scanned via a fluorescence slide scanner. (f) Extracted
data were analyzed.
Figure 1
Baseline comparisons between different
age groups of uninfected
ferrets. (a) Heat map of lectin microarray data. Median normalized
log2 ratios (Sample (S)/Reference(R)) of ferret lung samples were ordered by age (Newly weaned, n = 6, two samples per ferret; Adult, n = 4, two samples per ferret; Aged, n = 3, 2 samples
per ferret). Yellow, log2(S) > log2(R); blue, log2(R) > log2(S). Lectins binding α-2,3-sialosides
(α-2,3-Sia, pink), α-2,6-sialosides (α-2,6-Sia,
purple), high/oligo-mannose (high/oligo-Man, green), bisecting branching
(turquoise), N-acetyl-d-lactosamine (LacNAc,
brown), mucins (orange) and Lewis structures (blue) are highlighted
to the right of the heatmap. (b) Boxplot analysis of lectin binding
by SNA (α-2,6-sialosides). (c) Boxplot analysis of lectin binding
by MAL-II (α-2,3-sialosides). (d) Boxplot analysis of lectin
binding by GNL (oligo-mannose) as a function of age. Newly weaned:
cyan; Adult: orange; Aged: red. NS.: Not statistical; (*) p < 0.05; (**) p < 0.01; (***) p < 0.001. Wilcoxon’s t-test.
Glycans bound by lectins are shown in the Symbolic Nomenclature for
Glycomics (SNFG) at the side of the boxplots. Symbols are defined
as follows: galactose (yellow ●), N-acetylgalactosamine
(yellow ■), N-acetylglucosamine (blue ■),
mannose (green ●), sialic acid (purple ◆).
Workflow of Sample Preparation for Dual-Color Lectin Microarray
Analysis
(a) Lungs were harvested from
ferretsinfected with H1N1pdm09 and from uninfected control ferrets.
(b) Glycoproteins were isolated from tissues. (c) Glycoproteins were
labeled with Alexa Fluor 555-NHS. A pooled reference sample was orthogonally
labeled with Alexa Fluor 647-NHS. (d) Equal amounts of sample and
reference were mixed and hybridized on lectin microarrays. (e) Lectin
microarrays were scanned via a fluorescence slide scanner. (f) Extracted
data were analyzed.Baseline comparisons between different
age groups of uninfected
ferrets. (a) Heat map of lectin microarray data. Median normalized
log2 ratios (Sample (S)/Reference(R)) of ferret lung samples were ordered by age (Newly weaned, n = 6, two samples per ferret; Adult, n = 4, two samples per ferret; Aged, n = 3, 2 samples
per ferret). Yellow, log2(S) > log2(R); blue, log2(R) > log2(S). Lectins binding α-2,3-sialosides
(α-2,3-Sia, pink), α-2,6-sialosides (α-2,6-Sia,
purple), high/oligo-mannose (high/oligo-Man, green), bisecting branching
(turquoise), N-acetyl-d-lactosamine (LacNAc,
brown), mucins (orange) and Lewis structures (blue) are highlighted
to the right of the heatmap. (b) Boxplot analysis of lectin binding
by SNA (α-2,6-sialosides). (c) Boxplot analysis of lectin binding
by MAL-II (α-2,3-sialosides). (d) Boxplot analysis of lectin
binding by GNL (oligo-mannose) as a function of age. Newly weaned:
cyan; Adult: orange; Aged: red. NS.: Not statistical; (*) p < 0.05; (**) p < 0.01; (***) p < 0.001. Wilcoxon’s t-test.
Glycans bound by lectins are shown in the Symbolic Nomenclature for
Glycomics (SNFG) at the side of the boxplots. Symbols are defined
as follows: galactose (yellow ●), N-acetylgalactosamine
(yellow ■), N-acetylglucosamine (blue ■),
mannose (green ●), sialic acid (purple ◆).Sialic acid glycoconjugates on the host cell surface play
a crucial
role as both the receptor for influenza binding by hemagglutinin (α-2,6-sialosides)
and as the target of the influenzaneuraminidase (α-2,3- and
α-2,6-sialosides). Differences in sialoside levels may play
a role in differential susceptibility to the virus with age. In light
of this we examined the expression level of α-2,3- and α-2,6-sialosides
in the ferret lung. Both newly weaned and aged ferret lungs had higher
levels of α-2,6-sialosides than adult lungs (lectins: SNA, TJA-I,
∼1.3-fold NW/AD, ∼1.4-fold AG/AD, Figure b and Supporting Information, Figure S1), indicating that they may be more susceptible to viral
infection. In contrast to α-2,6-sialic acid, we observed a significant
age-dependent decrease in α-2,3-sialosides (lectin: MAL-II (∼1.5-fold
NW/AD, ∼2-fold NW/AG), SLBR-N,[31] diCBM40, SLBR-H,[31]Figure c and Supporting Information, Figure S2). Of particular note, the lectin MAL-II mainly recognizes
α-2,3-sialic acids on O-linked glycans. These glycans commonly
decorate proteins such as mucins, whose heavily sialylated structures
often act as a trap for viral particles.[32] While a decrease in α-2,3-sialosides is observed with age,
we also observed an increase in mucin levels in the lungs (Antibodies:
MUC5AC, MUC15, Supporting Information,
Figure S3). In addition, we observed a potentially related increase
in Lewis structures (Le), which often decorate mucins (Antibodies:
Leb, LeX, LeY, Supporting Information, Figure S4). Taken together, our data
suggest that the protective, highly sialylated mucins,[33−35] which allow clearance of the virus from the lungs, may alter with
age in a way that diminishes their protective capacity. These data
correlate well with the differences in viral clearance observed in
these ferrets, with young ferrets showing more rapid clearance and
aged ferrets showing prolonged infection and lower clearance of the
virus upon infection.[6]Recently,
our group identified high mannose as a severity marker
for influenza H1N1pdm09 infection in adult ferrets.[15] High mannose (defined here as Man7–9)
and oligo-mannose (defined as Man5–7) are targets
for innate immune lectin binding and may play a direct role in the
damage observed in influenza. Analysis of the mannose binding lectins
on the array showed distinct profiles for levels of high- and oligo-mannose.[36] Uninfected newly weaned animals had significantly
lower levels of oligo-mannose (GNL, NPA, HHL) than either adult or
aged ferrets (Figure d and Supporting Information, Figure S5).
However, high-mannose levels, recognized by the antiviral lectin Griffithsin
(GRFT),[37] were higher in the newly weaned
and adult animals as compared to the aged ferrets. Whether age-dependent
differences in the baseline levels of mannose in uninfected animals
have any bearing on the levels induced during host response to influenza
is currently unclear.
Aged Ferrets Have a Distinct Glycomic Response
from Adults to
Influenza Infection
Disease progression in adult and aged
ferretsinfected with H1N1pdm09 differs dramatically in timing and
presentation.[6] Aged ferrets had more persistent
viral infections and were unable to clear the virus by day 8 postinfection,
in contrast to adults. They also developed pneumonia later in the
course of their illness and had higher rates of mortality. To study
the impact of glycosylation on the host response to influenza in the
aged population, we performed lectin microarray analysis on lung punch
biopsies from infected aged ferrets (age >5.5 years). We performed
two concurrent studies: a severity study at day 8 postinfection (dpi
8, n = 29 ferrets) and a time-course analysis that
included the day 8 samples (dpi 1: n = 5; dpi 3: n = 7; dpi 5: n = 12 ferrets, Scheme ). Uninfected aged
ferrets were used as a control (n = 3 ferrets). We
analyzed two samples for each ferret.
Scheme 2
Workflow of Lung
Tissues for Time-Course Study and Severity Analysis
(a) Lung tissues for aged
and newly weaned ferrets were collected. Lung tissues were harvested
at different time points post-infection with H1N1pdm09 for lectin
microarray analysis. (*) Day 1 time point was not collected for newly
weaned ferrets. (**) Aged animals were sacrificed at day 8 due to
weight loss greater than 20%. (b) Severity was defined by PCS quartiles
for each age group at day 8 post-infections.
Workflow of Lung
Tissues for Time-Course Study and Severity Analysis
(a) Lung tissues for aged
and newly weaned ferrets were collected. Lung tissues were harvested
at different time points post-infection with H1N1pdm09 for lectin
microarray analysis. (*) Day 1 time point was not collected for newly
weaned ferrets. (**) Aged animals were sacrificed at day 8 due to
weight loss greater than 20%. (b) Severity was defined by PCS quartiles
for each age group at day 8 post-infections.The animals analyzed in this study were the same animals for which
pathology data were obtained in Bissel et al.[6] In our previous work, weight loss was used to evaluate the severity
of illness.[6,15] This is a common metric for severity
in animal models and can only be used for time points at more than
5 d postinfection. In studying the disease progression in aged ferrets
we observed a disparity between the pathology and the weight loss
data. In this age group, a severe outcome by weight loss was defined
as greater than 20% loss of mass.[6] A pneumonia
composite score, which sums the scores for lung involvement, bronchial
severity, and alveolar severity, was used to evaluate severity by
pathology.[6] In aged animals, which present
with pneumonia at later stages of infection, degree of severity by
pathology cannot be determined for early time points. A comparison
of the severity as defined by weight loss quartiles (Q0-Q1: <18.3%,
Q1-Q3: 18.3%–21.9%, Q3-Q4: >21.9%, Supporting Information, Figure S6) to the pneumonia composite scores at
day 8 showed no concordance between the two metrics. Instead, in the
aged population the trend was toward lower weight loss with increased
severity by pathology. This is in direct opposition to the trend observed
in adult ferrets. On the basis of our analysis, weight loss was not
an appropriate metric for severity in aged ferrets. Thus, the pneumonia
composite score was used as the severity metric for this cohort, as
it represents the physiologically relevant degree of illness in influenzainfection. We used quartiles to define mild, moderate, and severe
infections in the aged population (Mild: PCS < 8.5, n = 6 ferrets; Moderate: PCS = 8.5–11, n =
15; Severe: PCS > 11, n = 8). A heat map of the
normalized
data for ferrets sacrificed at day 7–8 postinfection arranged
by severity is presented in Figure . A heat map of the time-course analysis for aged ferrets
is shown in the Supporting Information,
Figure S7.
Figure 2
Glycomic changes in aged ferrets in response to influenza infection.
Heat map of lectin microarray data for aged ferrets (>5.5 years)
infected
with H1N1pdm09. Median normalized log2 ratios (Sample (S)/Reference(R)) of ferret lung samples
were ordered by severity. Uninfected (blue): n =
3. DPI 8: Mild (yellow), n = 6; Moderate (orange), n = 15; Severe (red), n = 8. Two samples
per ferret. Yellow, log2(S) > log2(R); Blue, log2(R) > log2(S). Lectins binding α-2,3-sialosides
(pink), α-2,6-sialosides (purple), high/oligo-mannose (green),
bisecting GlcNac (turquoise), O-linked glycans (charcoal) and Lewis
structures (blue) are highlighted to the right of the heat map.
Glycomic changes in aged ferrets in response to influenza infection.
Heat map of lectin microarray data for aged ferrets (>5.5 years)
infected
with H1N1pdm09. Median normalized log2 ratios (Sample (S)/Reference(R)) of ferret lung samples
were ordered by severity. Uninfected (blue): n =
3. DPI 8: Mild (yellow), n = 6; Moderate (orange), n = 15; Severe (red), n = 8. Two samples
per ferret. Yellow, log2(S) > log2(R); Blue, log2(R) > log2(S). Lectins binding α-2,3-sialosides
(pink), α-2,6-sialosides (purple), high/oligo-mannose (green),
bisecting GlcNac (turquoise), O-linked glycans (charcoal) and Lewis
structures (blue) are highlighted to the right of the heat map.We observed several changes in aged ferrets as
a function of infection
that did not overlay onto severity. For ease of comparison between
the aged and adult host responses, we reanalyzed the lectin microarray
data from our adult ferret cohort[15] using
PCS as the severity metric. In our previous work, adult ferrets showed
an increase in α-2,6 sialylation at early infection time points,
with levels returning to baseline by day 8 postinfection. In contrast,
we see a significant loss of α-2,6 sialylation in the aged ferret
lungs with this loss occurring early in the course of infection (SNA,
TJA-I, Figure and Supporting Information, Figure S8). We also observe
a loss in α-2,3-sialosides by day 8 postinfection in aged animals
(SLBR-B, SLBR-H, SLBR-N, diCBM-40, MAL-I, MAL-II, Figure and Supporting Information, Figure S9). A similar loss of α-2,3-sialosides
was observed in the adult ferrets. However, in this population, the
response was immediate, while in the aged animals a more gradual loss
of this glycan was observed. Influenza neuraminidases are known to
prefer α-2,3-sialosides,[38,39] and the more gradual
loss of this glycan in aged ferrets maps onto the pattern of delayed
infection observed in the lungs.[6]Uninfected aged animals had higher levels of nonsialylated mucins
compared to adults. Upon infection, we observed a substantial loss
of O-linked glycans, Lewis structures, and mucins in aged ferrets
(AIA, HAA, HPA, MPA, MNA-G, Mucin 15, Lea, Leb, LeY, Figure and Supporting Information, Figure
S10). This is similar to previous observations made in adult ferrets;
however, the degree of response in the aged ferrets was more pronounced.
We observed a strong loss of O-linked glycans, Lewis structures, and
mucins at the earliest time points (Supporting Information, Figure S11), which may contribute to the inability
of older animals to effectively fight infection.Our recent
work strongly suggests a role for high/oligo-mannose
as a key mediator of influenza severity.[15] In our original analysis, the severity in the adult ferrets was
defined by weight loss. Reanalysis of these data using pneumonia composite
scores did not change the previously observed relationship between
the high/oligo-mannose levels and severity (Supporting Information, Figure S12). We observe a similar increase in
high mannose as a function of severity in the aged animals when severity
is defined by pathology (GRFT, HHL, H84T,[40] NPA, GNA, ASA, Figure , Figure , and Supporting Information, Figure S12). However,
the timing of high mannose induction in the aged ferrets is delayed
when compared to adults. In the adult ferrets, high mannose was induced
at day 1 postinfection in line with the damage observed by pathology.[6] In the aged ferrets, we observe significant changes
in high mannose by day 3, which persisted to day 8 postinfection.
This is consistent with the more delayed development of pneumonia
in these animals. Overall, these data support high mannose as a marker
and potential mediator of severity in the host response to influenzainfection.
Figure 3
Dynamic changes in high-mannose are observed upon infection in
aged ferrets. Time-course analysis of high-mannose as observed by
GRFT following H1N1pdm09 infection (t = 0, 1, 3,
5, and 8 d). Boxplot of median normalized log2 ratios (Sample
(S)/Reference(R)) is shown. Disease
severity is indicated by color (Uninfected: blue; Early for Severity:
black; Mild: dark yellow; Moderate: orange, Severe: red). Glycans
bound by GRFT are shown in the symbolic nomenclature for glycomics
at the side of the boxplots.
Dynamic changes in high-mannose are observed upon infection in
aged ferrets. Time-course analysis of high-mannose as observed by
GRFT following H1N1pdm09 infection (t = 0, 1, 3,
5, and 8 d). Boxplot of median normalized log2 ratios (Sample
(S)/Reference(R)) is shown. Disease
severity is indicated by color (Uninfected: blue; Early for Severity:
black; Mild: dark yellow; Moderate: orange, Severe: red). Glycans
bound by GRFT are shown in the symbolic nomenclature for glycomics
at the side of the boxplots.
Newly Weaned Ferrets Show No Severity-Dependent Changes in the
Glycome
The 2019 pandemic H1N1 virus presented with mild
clinical symptoms in young children.[41−43] H1N1pdm09 infection
in newly weaned ferrets mimic these clinical symptoms, with lower
fevers and less weight loss.[5] Newly weaned
ferrets clear the virus faster and have much lower levels of alveolar
pneumonia.[6] We analyzed the glycosylation
changes in the lungs of newly weaned ferrets (six to seven weeks)
infected with H1N1pdm09, for which we had previously obtained pathology
data.[6] To examine the changes in glycosylation
over the course of the infection, we performed a time-course study
(uninfected, n = 16; dpi 3, n =
4; dpi 5, n = 4; dpi 8, n = 42;
dpi 14, n = 3, two samples per ferret). Severity
was determined for day 8 samples using the PCS metric as previously
described. A heat map of the time-course data, organized by severity
for day 8 postinfection, is shown in Figure .
Figure 4
Newly weaned ferrets undergo glycan changes
early in response to
influenza. Median normalized log2 ratios (Sample (S)/Reference(R)) of newly weaned (six to
seven weeks of age) ferret lung samples were ordered by days post
infection. Uninfected (blue), n = 16, two samples
per ferret; day 3 (salmon), n = 4, two samples per
ferret; day 5 (magenta), n = 4, two samples per ferret;
day 8, ordered by severity (mild, yellow; moderate, orange; severe,
red), n = 42, two samples per ferret; day 14 (maroon), n = 3, two samples per ferret. Yellow, log2(S) > log2(R); blue, log2(R) > log2(S).
Lectins binding α-2,6-sialosides (purple), high/oligo-mannose
(green), bisecting GlcNac (turquoise), and core fucose (light pink)
are highlighted to the right of the heatmap.
Newly weaned ferrets undergo glycan changes
early in response to
influenza. Median normalized log2 ratios (Sample (S)/Reference(R)) of newly weaned (six to
seven weeks of age) ferret lung samples were ordered by days post
infection. Uninfected (blue), n = 16, two samples
per ferret; day 3 (salmon), n = 4, two samples per
ferret; day 5 (magenta), n = 4, two samples per ferret;
day 8, ordered by severity (mild, yellow; moderate, orange; severe,
red), n = 42, two samples per ferret; day 14 (maroon), n = 3, two samples per ferret. Yellow, log2(S) > log2(R); blue, log2(R) > log2(S).
Lectins binding α-2,6-sialosides (purple), high/oligo-mannose
(green), bisecting GlcNac (turquoise), and core fucose (light pink)
are highlighted to the right of the heatmap.In contrast to both adults and aged ferrets, we saw no clear severity-dependent
differences in the newly weaned animals at day 8 postinfection. We
did observe an increase in complex N-glycan epitopes early in the
course of infection, peaking by day 5 and returning to preinfection
levels by day 8 (α-2,6-sialic acid: SNA; core fucose: LcH, PSA;
bisecting branching: PHA-E, Calsepa, Figure and Supporting Information, Figure S13). Although high/oligo-mannose trended with complex N-glycans
in the time course, the changes were not statistically significant.
Overall, the lack of strong changes in the glycome is consistent with
the mild nature of illness observed in young ferrets, modeling the
human population.
Conclusions
In 2009, a new pandemic
H1N1influenza A virus emerged and displayed
an unusual severity pattern, impacting adults more severely than young
children or the elderly. The lower impact on the elderly population,
who are typically at high risk for influenza severity, was later determined
to be a result of pre-existing immunity. The ferret model of influenza
has been found to mimic the differences in age-dependent illness observed
in the absence of pre-existing immunity. In this model, there is a
gradient of severity with young ferrets showing mild illness and aged
ferrets displaying high severity, as would be expected in an influenza-naïve
aged human population. The origins of this disparity in host response
is still unclear. In this work, we show dramatic age-dependent differences
in the ferret glycome and host response to influenza that overlay
differences observed in severity. These include age-dependent differences
in mucin-related epitopes that may explain differences in viral clearance
observed between populations. In recent work, we posited that the
induction of high mannose due to influenza infection could be causative
of severity through overengagement of the innate immune system via
lectins, such as MBL2. Our current study shows that high mannose is
induced in the aged population, where high levels of severity are
observed, but not in newly weaned ferrets, which display a mild phenotype.
This is consistent with our current hypothesis and points to the need
for further study to determine if the glycomic host response is a
critical mediator of influenza severity.
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