Literature DB >> 23788322

Advances in lectin microarray technology: optimized protocols for piezoelectric print conditions.

Kanoelani T Pilobello1, Praveen Agrawal, Richard Rouse, Lara K Mahal.   

Abstract

Lectin microarray technology has been used to profile the glycosylation of a multitude of biological and clinical samples, leading to new clinical biomarkers and advances in glycobiology. Lectin microarrays, which include >90 plant lectins, recombinant lectins, and selected antibodies, are used to profile N-linked, O-linked, and glycolipid glycans. The specificity and depth of glycan profiling depends upon the carbohydrate-binding proteins arrayed. The current set targets mammalian carbohydrates including fucose, high mannose, branched and complex N-linked, α- and β-galactose and GalNAc, α-2,3- and α-2,6-sialic acid, LacNAc, and Lewis X epitopes. Previous protocols have described the use of a contact microarray printer for lectin microarray production. Here, an updated protocol that uses a non-contact, piezoelectric printer, which leads to increased lectin activity on the array, is presented. Optimization of print and sample hybridization conditions and methods of analysis are discussed.
© 2013 by John Wiley & Sons, Inc.

Entities:  

Keywords:  Nano‐Plotter; carbohydrate analysis; glycomics; lectin microarray; piezoelectric

Mesh:

Substances:

Year:  2013        PMID: 23788322      PMCID: PMC4734107          DOI: 10.1002/9780470559277.ch120035

Source DB:  PubMed          Journal:  Curr Protoc Chem Biol        ISSN: 2160-4762


  17 in total

1.  Molecular imaging using fluorescent lectins permits rapid endoscopic identification of dysplasia in Barrett's esophagus.

Authors:  Elizabeth L Bird-Lieberman; André A Neves; Pierre Lao-Sirieix; Maria O'Donovan; Marco Novelli; Laurence B Lovat; William S Eng; Lara K Mahal; Kevin M Brindle; Rebecca C Fitzgerald
Journal:  Nat Med       Date:  2012-01-15       Impact factor: 53.440

2.  Development of a lectin microarray for the rapid analysis of protein glycopatterns.

Authors:  Kanoelani T Pilobello; Lakshmipriya Krishnamoorthy; Deepika Slawek; Lara K Mahal
Journal:  Chembiochem       Date:  2005-06       Impact factor: 3.164

3.  Novel carbohydrate-binding activity of pancreatic trypsins to N-linked glycans of glycoproteins.

Authors:  Hiroko Takekawa; Chieko Ina; Reiko Sato; Kazunori Toma; Haruko Ogawa
Journal:  J Biol Chem       Date:  2006-01-17       Impact factor: 5.157

4.  Lectin microarray reveals binding profiles of Lactobacillus casei strains in a comprehensive analysis of bacterial cell wall polysaccharides.

Authors:  Emi Yasuda; Hiroaki Tateno; Jun Hirabayashi; Jun Hirabarashi; Tohru Iino; Tomoyuki Sako
Journal:  Appl Environ Microbiol       Date:  2011-05-20       Impact factor: 4.792

5.  Identification of a conserved glycan signature for microvesicles.

Authors:  Bianca S Batista; William S Eng; Kanoelani T Pilobello; Karen D Hendricks-Muñoz; Lara K Mahal
Journal:  J Proteome Res       Date:  2011-09-23       Impact factor: 4.466

6.  Detection and verification of glycosylation patterns of glycoproteins from clinical specimens using lectin microarrays and lectin-based immunosorbent assays.

Authors:  Yan Li; Sheng-Ce Tao; G Steven Bova; Alvin Y Liu; Daniel W Chan; Heng Zhu; Hui Zhang
Journal:  Anal Chem       Date:  2011-10-26       Impact factor: 6.986

7.  Lectin microarray profiling of metastatic breast cancers.

Authors:  Simon A Fry; Babak Afrough; Hannah J Lomax-Browne; John F Timms; Louiza S Velentzis; Anthony J C Leathem
Journal:  Glycobiology       Date:  2011-04-19       Impact factor: 4.313

8.  Separation of branched sialylated oligosaccharides using high-pH anion-exchange chromatography with pulsed amperometric detection.

Authors:  R R Townsend; M R Hardy; D A Cumming; J P Carver; B Bendiak
Journal:  Anal Biochem       Date:  1989-10       Impact factor: 3.365

9.  Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein.

Authors:  Tsuyoshi Shirai; Yasuharu Watanabe; Min-sub Lee; Tomohisa Ogawa; Koji Muramoto
Journal:  J Mol Biol       Date:  2009-06-12       Impact factor: 5.469

10.  HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin.

Authors:  Lakshmi Krishnamoorthy; Julian W Bess; Alex B Preston; Kunio Nagashima; Lara K Mahal
Journal:  Nat Chem Biol       Date:  2009-02-22       Impact factor: 15.040

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  17 in total

Review 1.  Cancer stem cell marker glycosylation: Nature, function and significance.

Authors:  Brody W Mallard; Joe Tiralongo
Journal:  Glycoconj J       Date:  2017-06-17       Impact factor: 2.916

2.  Genetically encoded fragment-based discovery of glycopeptide ligands for carbohydrate-binding proteins.

Authors:  Simon Ng; Edith Lin; Pavel I Kitov; Katrina F Tjhung; Oksana O Gerlits; Lu Deng; Brian Kasper; Amika Sood; Beth M Paschal; Ping Zhang; Chang-Chun Ling; John S Klassen; Christopher J Noren; Lara K Mahal; Robert J Woods; Leighton Coates; Ratmir Derda
Journal:  J Am Chem Soc       Date:  2015-04-16       Impact factor: 15.419

3.  A Systems Biology Approach Identifies FUT8 as a Driver of Melanoma Metastasis.

Authors:  Praveen Agrawal; Barbara Fontanals-Cirera; Elena Sokolova; Samson Jacob; Christopher A Vaiana; Diana Argibay; Veronica Davalos; Meagan McDermott; Shruti Nayak; Farbod Darvishian; Mireia Castillo; Beatrix Ueberheide; Iman Osman; David Fenyö; Lara K Mahal; Eva Hernando
Journal:  Cancer Cell       Date:  2017-06-12       Impact factor: 31.743

4.  Mapping posttranscriptional regulation of the human glycome uncovers microRNA defining the glycocode.

Authors:  Praveen Agrawal; Tomasz Kurcon; Kanoelani T Pilobello; John F Rakus; Sujeethraj Koppolu; Zhongyin Liu; Bianca S Batista; William S Eng; Ku-Lung Hsu; Yaxuan Liang; Lara K Mahal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

5.  Metabolism and global protein glycosylation are differentially expressed in healthy and osteoarthritic equine carpal synovial fluid.

Authors:  Kira J Noordwijk; Rui Qin; Maria E Diaz-Rubio; Sheng Zhang; Jin Su; Lara K Mahal; Heidi L Reesink
Journal:  Equine Vet J       Date:  2021-03-18       Impact factor: 2.888

6.  Glycomic Analysis Reveals a Conserved Response to Bacterial Sepsis Induced by Different Bacterial Pathogens.

Authors:  Daniel W Heindel; Shuhui Chen; Peter V Aziz; Jonathan Y Chung; Jamey D Marth; Lara K Mahal
Journal:  ACS Infect Dis       Date:  2022-04-29       Impact factor: 5.578

7.  Studying the effects of reproductive hormones and bacterial vaginosis on the glycome of lavage samples from the cervicovaginal cavity.

Authors:  Linlin Wang; Sujeethraj Koppolu; Catherine Chappell; Bernard J Moncla; Sharon L Hillier; Lara K Mahal
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

8.  miRNA proxy approach reveals hidden functions of glycosylation.

Authors:  Tomasz Kurcon; Zhongyin Liu; Anika V Paradkar; Christopher A Vaiana; Sujeethraj Koppolu; Praveen Agrawal; Lara K Mahal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

9.  Development and application of a fluorescence protein microarray for detecting serum alpha-fetoprotein in patients with hepatocellular carcinoma.

Authors:  Aiying Zhang; Chengzeng Yin; Zhenshun Wang; Yonghong Zhang; Yuanshun Zhao; Ang Li; Huanqin Sun; Dongdong Lin; Ning Li
Journal:  J Int Med Res       Date:  2016-11-24       Impact factor: 1.671

Review 10.  Application of Lectin Microarrays for Biomarker Discovery.

Authors:  Kai Dang; Wenjuan Zhang; Shanfeng Jiang; Xiao Lin; Airong Qian
Journal:  ChemistryOpen       Date:  2020-03-02       Impact factor: 2.911

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