Literature DB >> 32980958

Population Genetics of Polyploid Complex Psidium cattleyanum Sabine (Myrtaceae): Preliminary Analyses Based on New Species-Specific Microsatellite Loci and Extension to Other Species of the Genus.

Raquel Moura Machado1, Fernanda Ancelmo de Oliveira2, Fábio de Matos Alves2, Anete Pereira de Souza2, Eliana Regina Forni-Martins2.   

Abstract

Polyploidy is a phenomenon that alters the genetic diversity of populations and has been reported as one of the most important evolutionary forces for plant diversification. The Psidium cattleyanum complex comprises a group of wild populations with several ploidy levels reported in the literature. The multiple cytotypes, associated with its wide distribution area, make this species a potential key model for understanding evolutionary processes related to polyploidization. In this study, we isolated and characterized nuclear microsatellite markers of P. cattleyanum and tested their transferability to other nine species of the genus. We performed a preliminary analysis of genetic diversity and population structure in three populations of P. cattleyanum. The three populations analyzed had different chromosome numbers, being polyploid cytotypes (2n = 6x = 66, 2n = 7x = 77 and 2n = 8x = 88). We designed 46 primer pairs and successfully amplified 37 markers, from which the 10 best were selected for analysis. Considering both the PIC and DP values, most of markers were highly informative. The new SSR markers were used to assess the levels of genetic diversity of the populations and detected one population with predominance of sexual reproduction. DAPC analysis pointed the formation of three groups, which corresponded to the populations analyzed. The markers were successfully amplified in related species, with some species presenting 80% transferability. By producing this panel of polymorphic microsatellites, we contribute to the understanding evolution in groups of natural polyploids for future studies.

Entities:  

Keywords:  Araçá; Cattley guava; Cross-amplification; Cytotype; Genetic structure; Polyploidy; SSR

Mesh:

Substances:

Year:  2020        PMID: 32980958     DOI: 10.1007/s10528-020-10002-1

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   1.890


  23 in total

Review 1.  Mechanisms of genomic rearrangements and gene expression changes in plant polyploids.

Authors:  Z Jeffrey Chen; Zhongfu Ni
Journal:  Bioessays       Date:  2006-03       Impact factor: 4.345

2.  Studies in the leguminosae; chromosome numbers in Erythrina L.

Authors:  E ATCHISON
Journal:  Am J Bot       Date:  1947-10       Impact factor: 3.844

3.  POLYSAT: an R package for polyploid microsatellite analysis.

Authors:  Lindsay V Clark; Marie Jasieniuk
Journal:  Mol Ecol Resour       Date:  2011-02-06       Impact factor: 7.090

Review 4.  Mixed-Ploidy Species: Progress and Opportunities in Polyploid Research.

Authors:  Filip Kolář; Martin Čertner; Jan Suda; Peter Schönswetter; Brian C Husband
Journal:  Trends Plant Sci       Date:  2017-10-17       Impact factor: 18.313

5.  Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives.

Authors:  Anthony E Baniaga; Hannah E Marx; Nils Arrigo; Michael S Barker
Journal:  Ecol Lett       Date:  2019-10-21       Impact factor: 9.492

6.  Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.

Authors:  Thibaut Jombart; Sébastien Devillard; François Balloux
Journal:  BMC Genet       Date:  2010-10-15       Impact factor: 2.797

Review 7.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

8.  Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction.

Authors:  Zhian N Kamvar; Javier F Tabima; Niklaus J Grünwald
Journal:  PeerJ       Date:  2014-03-04       Impact factor: 2.984

9.  Refinement of the karyological aspects of Psidium guineense (Swartz, 1788): a comparison with Psidium guajava (Linnaeus, 1753).

Authors:  Anelise Machado Marques; Amélia Carlos Tuler; Carlos Roberto Carvalho; Tatiana Tavares Carrijo; Marcia Flores da Silva Ferreira; Wellington Ronildo Clarindo
Journal:  Comp Cytogenet       Date:  2016-02-02       Impact factor: 1.800

10.  The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.

Authors:  Richard G J Hodel; M Claudia Segovia-Salcedo; Jacob B Landis; Andrew A Crowl; Miao Sun; Xiaoxian Liu; Matthew A Gitzendanner; Norman A Douglas; Charlotte C Germain-Aubrey; Shichao Chen; Douglas E Soltis; Pamela S Soltis
Journal:  Appl Plant Sci       Date:  2016-06-16       Impact factor: 1.936

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  2 in total

1.  Genetic Diversity and Population Structure of Psidium Species from Restinga: A Coastal and Disturbed Ecosystem of the Brazilian Atlantic Forest.

Authors:  Carolina de Oliveira Bernardes; Amélia Carlos Tuler; Drielli Canal; Marina Santos Carvalho; Adésio Ferreira; Marcia Flores da Silva Ferreira
Journal:  Biochem Genet       Date:  2022-05-16       Impact factor: 1.890

Review 2.  Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content.

Authors:  Malarvizhi Mathiazhagan; Bhavya Chidambara; Laxman R Hunashikatti; Kundapura V Ravishankar
Journal:  Genes (Basel)       Date:  2021-11-25       Impact factor: 4.096

  2 in total

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