| Literature DB >> 32980851 |
Yajuan Li1, Qin Yang1, Yang Yu1.
Abstract
BACKGROUND Epimedii Herba is a traditional Chinese herbal medicine used to treat central nervous system diseases such as Alzheimer's disease in China. However, the pharmacological mechanism is unclear. To investigate the mechanisms of Epimedii Herba in the treatment of Alzheimer's disease, we assessed effective compounds, corresponding targets, and related pathways of Epimedii Herba in the treatment of Alzheimer's disease based on network pharmacology. MATERIAL AND METHODS The active components and targets of Epimedii Herba were obtained through the TCMSP database and the DrugBank database. The DisGeNET database and GeneCards database were used to search for Alzheimer's disease targets. The common targets of components and disease were obtained by Wayne diagram. Gene ontology (GO) analysis and enrichment analysis of the Kyoto Encyclopedia of Genes and Genomes (KEGG) were performed using the DAVID database. The component-target-pathway interaction network model was constructed using Cytoscape software. Auto Duck Vina software was used for molecular docking to analyze the affinity of the key ingredients and the main targets. RESULTS We screened 17 active ingredients and 27 key targets of Epimedii Herba in the treatment of Alzheimer's disease, which were related to the HIF-1 signaling pathway, TNF signaling pathway, PI3K-Akt signaling pathway, NF-kappaB signaling pathway, VEGF signaling pathway, and sphingolipid signaling pathway. CONCLUSIONS Based on network pharmacology, the multi-component, multi-target, and multi-pathway characteristics of Epimedii Herba in the treatment of Alzheimer's disease were explored. Our results provide new ideas for future pharmacological and experimental research on Epimedii Herba in the treatment of Alzheimer's disease.Entities:
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Year: 2020 PMID: 32980851 PMCID: PMC7528617 DOI: 10.12659/MSM.926295
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Potential active components of Epimedii Herba.
| Molecule Name | OB (%) | DL | |
|---|---|---|---|
| MOL000622 | Magnograndiolide | 63.71 | 0.19 |
| MOL004367 | olivil | 62.23 | 0.41 |
| MOL004388 | 6-hydroxy-11,12-dimethoxy-2,2-dimethyl-1,8-dioxo-2,3,4,8-tetrahydro-1H-isochromeno[3,4-h]isoquinolin-2-ium | 60.64 | 0.66 |
| MOL004382 | Yinyanghuo A | 56.96 | 0.77 |
| MOL004396 | 1,2-bis(4-hydroxy-3-methoxyphenyl)propan-1,3-diol | 52.31 | 0.22 |
| MOL004386 | Yinyanghuo E | 51.63 | 0.55 |
| MOL004391 | 8-(3-methylbut-2-enyl)-2-phenyl-chromone | 48.54 | 0.25 |
| MOL000098 | quercetin | 46.43 | 0.28 |
| MOL004384 | Yinyanghuo C | 45.67 | 0.5 |
| MOL004373 | Anhydroicaritin | 45.41 | 0.44 |
| MOL001645 | Linoleyl acetate | 42.1 | 0.2 |
| MOL000422 | kaempferol | 41.88 | 0.24 |
| MOL004394 | Anhydroicaritin-3-O-alpha-L-rhamnoside | 41.58 | 0.61 |
| MOL004425 | Icariin | 41.58 | 0.61 |
| MOL004380 | C-Homoerythrinan, 1,6-didehydro-3,15,16-trimethoxy-, (3.beta) | 39.14 | 0.49 |
| MOL003542 | 8-Isopentenyl-kaempferol | 38.04 | 0.39 |
| MOL001510 | 24-epicampesterol | 37.58 | 0.71 |
| MOL000359 | sitosterol | 36.91 | 0.75 |
| MOL001771 | poriferast-5-en-3beta-ol | 36.91 | 0.75 |
| MOL000006 | luteolin | 36.16 | 0.25 |
| MOL003044 | Chryseriol | 35.85 | 0.27 |
| MOL001792 | DFV | 32.76 | 0.18 |
| MOL004427 | Icariside A7 | 31.91 | 0.86 |
Figure 1The active component-target network of Epimedii Herba. Yellow nodes represent active components, green nodes represent targets.
Figure 2Common Gene Targets of Epimedii Herba and AD.
Figure 3Analysis of key target genes of Epimedii Herba against AD. (A) PPI network diagram of Key Targets. (B) Interaction network of targets for Epimedii Herba against AD. (C) Distribution of degree. (D) Betweenness centrality. The size and color of the nodes are proportional to degree centrality by topology analysis.
Figure 4GO analysis for the key targets of Epimedii Herba against AD.
Figure 5KEGG pathway enrichment of Epimedii Herba against AD. Top 20 pathways enriched based on target genes (the abscissa is the rich factor, the ordinate is pathway name, the size of the dot indicates the number of target genes, and the color represents the P-value).
KEGG signal pathway information.
| Term | Count | Percentage (%) | P value | Genes |
|---|---|---|---|---|
| HIF-1 signaling pathway | 9 | 33.33 | 10−8 | MAPK1, TF, IL6, HMOX1, BCL2, VEGFA, NOS3, NOS2, INSR |
| TNF signaling pathway | 6 | 22.22 | 3.44×10−5 | MAPK1, IL6, TNF, CCL2, PTGS2, IL1B |
| Serotonergic synapse | 6 | 22.22 | 4.11×10−5 | MAPK1, APP, PTGS2, SLC6A4, PTGS1, MAOB |
| NOD-like receptor signaling pathway | 5 | 18.52 | 4.39×10−5 | MAPK1, IL6, TNF, CCL2, IL1B |
| Prion diseases | 4 | 14.81 | 2.36×10−4 | MAPK1, IL6, IL1B, SOD1 |
| Rheumatoid arthritis | 5 | 18.52 | 2.58×10−4 | IL6, TNF, CCL2, VEGFA, IL1B |
| Influenza A | 6 | 22.22 | 3.44×10−4 | MAPK1, IL6, TNF, CCL2, GSK3B, IL1B |
| Pathways in cancer | 8 | 29.63 | 3.69×10−4 | MAPK1, IL6, PTGS2, GSK3B, BCL2, VEGFA, PPARG, NOS2 |
| Insulin resistance | 5 | 18.52 | 5.64×10−4 | IL6, TNF, GSK3B, NOS3, INSR |
| Malaria | 4 | 14.81 | 6.99×10−4 | IL6, TNF, CCL2, IL1B |
| Sphingolipid signaling pathway | 5 | 18.52 | 8.39×10−4 | MAPK1, TNF, BCL2, CTSD, NOS3 |
| PI3K-Akt signaling pathway | 7 | 25.93 | 1.2×10−3 | MAPK1, IL6, GSK3B, BCL2, VEGFA, NOS3, INSR |
| VEGF signaling pathway | 4 | 14.81 | 1.33×10−3 | MAPK1, PTGS2, VEGFA, NOS3 |
| Non-alcoholic fatty liver disease (NAFLD) | 5 | 18.52 | 1.97×10−3 | IL6, TNF, GSK3B, IL1B, INSR |
| Alzheimer’s disease | 5 | 18.52 | 2.91×10−3 | MAPK1, APP, TNF, GSK3B, IL1B |
| Salmonella infection | 4 | 14.81 | 3.22×10−3 | MAPK1, IL6, IL1B, NOS2 |
| NF-kappa B signaling pathway | 4 | 14.81 | 3.68×10−3 | TNF, PTGS2, BCL2, IL1B |
| Graft-versus-host disease | 3 | 11.11 | 6.25×10−3 | IL6, TNF, IL1B |
| Toll-like receptor signaling pathway | 4 | 14.81 | 6.39×10−3 | MAPK1, IL6, TNF, IL1B |
| Amoebiasis | 4 | 14.81 | 6.39×10−3 | IL6, TNF, IL1B, NOS2 |
Figure 6The analysis of HIF-1 signaling pathway. Red color represents targets of Epimedii Herba of enrichment in the HIF-1 pathway.
Figure 7The active component-target-pathway network of Epimedii Herba against AD. Yellow nodes represent active ingredients; blue nodes represent key targets; green arrows represent pathways; edges represent interactions among them.
Figure 8Docking of key molecules with the major target proteins. (A) Molecular docking model of the Quercetin and Prostaglandin-endoperoxide synthase 2. (B) Molecular docking model of the Quercetin and Mitogen-activated protein kinase 1. (C) Molecular docking model of the Luteolin and Tumor necrosis factor alpha. The black dotted line and purple arrow in the figure represent hydrogen bonds and the blue dotted line and green arrow represent pi-pi stacking.
Docking of molecules with major target proteins.
| Target | PDB ID | Ligand | Three dimensional coordinates of the active site | Molecule | Affinity (kcal/mol) |
|---|---|---|---|---|---|
| PTGS2 | 5KIR | NAG | x=23.59; y=2.418; z=34.258 | Quercetin | −9.6 |
| MAPK1 | 4QP4 | 36O | x=32.637; y=46.133; z=42.3 | Quercetin | −8 |
| TNF | 6OOY | A7M | x=−11.496; y=1.548; z=−18.373 | Luteolin | −10.6 |