Literature DB >> 32974869

Conserved Amino Acid Residues that Affect Structural Stability of Candida boidinii Formate Dehydrogenase.

Huri Bulut1,2, Busra Yuksel3, Mehmet Gul3, Meryem Eren3, Ersin Karatas4, Nazli Kara1, Berin Yilmazer4, Abdurrahim Kocyigit2, Nikolaos E Labrou5, Baris Binay6.   

Abstract

The NAD+-dependent formate dehydrogenase (FDH; EC 1.2.1.2) from Candida boidinii (CboFDH) has been extensively used in NAD(H)-dependent industrial biocatalysis as well as in the production of renewable fuels and chemicals from carbon dioxide. In the present work, the effect of amino acid residues Phe285, Gln287, and His311 on structural stability was investigated by site-directed mutagenesis. The wild-type and mutant enzymes (Gln287Glu, His311Gln, and Phe285Thr/His311Gln) were cloned and expressed in Escherichia coli. Circular dichroism (CD) spectroscopy was used to determine the effect of each mutation on thermostability. The results showed the decisive roles of Phe285, Gln287, and His311 on enhancing the enzyme's thermostability. The melting temperatures for the wild-type and the mutant enzymes Gln287Glu, His311Gln, and Phe285Thr/His311Gln were 64, 70, 77, and 73 °C, respectively. The effects of pH and temperature on catalytic activity of the wild-type and mutant enzymes were also investigated. Interestingly, the mutant enzyme His311Gln exhibits a large shift of pH optimum at the basic pH range (1 pH unit) and substantial increase of the optimum temperature (25 °C). The present work supports the multifunctional role of the conserved residues Phe285, Gln287, and His311 and further underlines their pivotal roles as targets in protein engineering studies.

Entities:  

Keywords:  Candida boidinii; Formate dehydrogenase; Molecular modeling; Site-directed mutagenesis; Thermostability

Mesh:

Substances:

Year:  2020        PMID: 32974869     DOI: 10.1007/s12010-020-03429-0

Source DB:  PubMed          Journal:  Appl Biochem Biotechnol        ISSN: 0273-2289            Impact factor:   2.926


  11 in total

1.  Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii.

Authors:  Qi Guo; Lokesh Gakhar; Kyle Wickersham; Kevin Francis; Alexandra Vardi-Kilshtain; Dan T Major; Christopher M Cheatum; Amnon Kohen
Journal:  Biochemistry       Date:  2016-05-03       Impact factor: 3.162

2.  Identification of catalysis, substrate, and coenzyme binding sites and improvement catalytic efficiency of formate dehydrogenase from Candida boidinii.

Authors:  Wei Jiang; Peng Lin; Ruonan Yang; Baishan Fang
Journal:  Appl Microbiol Biotechnol       Date:  2016-05-20       Impact factor: 4.813

3.  Directed evolution of a formate dehydrogenase for increased tolerance to ionic liquids reveals a new site for increasing the stability.

Authors:  Julie L L Carter; Mourad Bekhouche; Alexandre Noiriel; Loïc J Blum; Bastien Doumèche
Journal:  Chembiochem       Date:  2014-10-24       Impact factor: 3.164

4.  Chaetomium thermophilum formate dehydrogenase has high activity in the reduction of hydrogen carbonate (HCO3 -) to formate.

Authors:  Aşkın Sevinç Aslan; Jarkko Valjakka; Jouni Ruupunen; Deniz Yildirim; Nicholas J Turner; Ossi Turunen; Barış Binay
Journal:  Protein Eng Des Sel       Date:  2016-11-24       Impact factor: 1.650

5.  Rational Engineering of Formate Dehydrogenase Substrate/Cofactor Affinity for Better Performance in NADPH Regeneration.

Authors:  He-Wen Jiang; Qi Chen; Jiang Pan; Gao-Wei Zheng; Jian-He Xu
Journal:  Appl Biochem Biotechnol       Date:  2020-05-13       Impact factor: 2.926

6.  Synthesis of Formate from CO2 Gas Catalyzed by an O2-Tolerant NAD-Dependent Formate Dehydrogenase and Glucose Dehydrogenase.

Authors:  Xuejun Yu; Dimitri Niks; Xin Ge; Haizhou Liu; Russ Hille; Ashok Mulchandani
Journal:  Biochemistry       Date:  2019-03-18       Impact factor: 3.162

7.  Efficient and Selective Electrochemically Driven Enzyme-Catalyzed Reduction of Carbon Dioxide to Formate using Formate Dehydrogenase and an Artificial Cofactor.

Authors:  Buddhinie S Jayathilake; Supriyo Bhattacharya; Nagarajan Vaidehi; S R Narayanan
Journal:  Acc Chem Res       Date:  2019-02-11       Impact factor: 22.384

8.  Elevated conversion of CO2 to versatile formate by a newly discovered formate dehydrogenase from Rhodobacter aestuarii.

Authors:  Kyoungseon Min; Yong-Soo Park; Gwon Woo Park; Joon-Pyo Lee; Myounghoon Moon; Chang Hyun Ko; Jin-Suk Lee
Journal:  Bioresour Technol       Date:  2020-03-06       Impact factor: 9.642

9.  High-resolution structures of formate dehydrogenase from Candida boidinii.

Authors:  Katja Schirwitz; Andrea Schmidt; Victor S Lamzin
Journal:  Protein Sci       Date:  2007-06       Impact factor: 6.725

10.  NAD (+) -dependent Formate Dehydrogenase from Plants.

Authors:  A A Alekseeva; S S Savin; V I Tishkov
Journal:  Acta Naturae       Date:  2011-10       Impact factor: 1.845

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  1 in total

1.  Insight into the broadened substrate scope of nitrile hydratase by static and dynamic structure analysis.

Authors:  Dong Ma; Zhongyi Cheng; Lukasz Peplowski; Laichuang Han; Yuanyuan Xia; Xiaodong Hou; Junling Guo; Dejing Yin; Yijian Rao; Zhemin Zhou
Journal:  Chem Sci       Date:  2022-07-06       Impact factor: 9.969

  1 in total

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