Literature DB >> 27887026

Chaetomium thermophilum formate dehydrogenase has high activity in the reduction of hydrogen carbonate (HCO3 -) to formate.

Aşkın Sevinç Aslan1, Jarkko Valjakka2, Jouni Ruupunen2, Deniz Yildirim3, Nicholas J Turner4, Ossi Turunen5, Barış Binay6.   

Abstract

While formate dehydrogenases (FDHs) have been used for cofactor recycling in chemoenzymatic synthesis, the ability of FDH to reduce CO2 could also be utilized in the conversion of CO2 to useful products via formate (HCOO-). In this study, we investigated the reduction of CO2 in the form of hydrogen carbonate (HCO3-) to formate by FDHs from Candida methylica (CmFDH) and Chaetomium thermophilum (CtFDH) in a NADH-dependent reaction. The catalytic performance with HCO3- as a substrate was evaluated by measuring the kinetic rates and conducting productivity assays. CtFDH showed a higher efficiency in converting HCO3- to formate than CmFDH, whereas CmFDH was better in the oxidation of formate. The pH optimum of the reduction was at pH 7-8. However, the high concentrations of HCO3- reduced the reaction rate. CtFDH was modeled in the presence of HCO3- showing that it fits to the active site. The active site setting for hydride transfer in CO2 reduction was modeled. The hydride donated by NADH would form a favorable contact to the carbon atom of HCO3-, resulting in a surplus of electrons within the molecule. This would cause the complex formed by hydrogen carbonate and the hydride to break into formate and hydroxide ions.
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Entities:  

Keywords:  NAD+-dependent formate dehydrogenase; biotransformation of CO2zzm321990; catalytic mechanism; kinetic parameters with hydrogen carbonate; molecular modeling

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Year:  2016        PMID: 27887026     DOI: 10.1093/protein/gzw062

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  6 in total

1.  Engineered formate dehydrogenase from Chaetomium thermophilum, a promising enzymatic solution for biotechnical CO2 fixation.

Authors:  Mehmet M Çakar; Jouni Ruupunen; Juan Mangas-Sanchez; William R Birmingham; Deniz Yildirim; Ossi Turunen; Nicholas J Turner; Jarkko Valjakka; Barış Binay
Journal:  Biotechnol Lett       Date:  2020-06-16       Impact factor: 2.461

2.  Immobilization of Ene Reductase in Polyvinyl Alcohol Hydrogel.

Authors:  Dilek Alagöz; Nazli Ece Varan; Ali Toprak; S Seyhan Tükel; Deniz Yildirim
Journal:  Protein J       Date:  2022-06-17       Impact factor: 4.000

3.  Effect of Metal Ions on the Activity of Ten NAD-Dependent Formate Dehydrogenases.

Authors:  Huri Bulut; Jarkko Valjakka; Busra Yuksel; Berin Yilmazer; Ossi Turunen; Baris Binay
Journal:  Protein J       Date:  2020-10-12       Impact factor: 2.371

4.  Conserved Amino Acid Residues that Affect Structural Stability of Candida boidinii Formate Dehydrogenase.

Authors:  Huri Bulut; Busra Yuksel; Mehmet Gul; Meryem Eren; Ersin Karatas; Nazli Kara; Berin Yilmazer; Abdurrahim Kocyigit; Nikolaos E Labrou; Baris Binay
Journal:  Appl Biochem Biotechnol       Date:  2020-09-25       Impact factor: 2.926

5.  Enhancing recombinant Chaetomium thermophilium Formate Dehydrogenase Expression with CRISPR Technology.

Authors:  Erhan Ar; Adem Demiroğlu; Mahmut Selim Yılmaz; Berin Yılmazer; Elif Sibel Aslan; Barış Binay
Journal:  Protein J       Date:  2021-05-17       Impact factor: 2.371

Review 6.  Enzymes for Efficient CO2 Conversion.

Authors:  Aişe Ünlü; Zeynep Efsun Duman-Özdamar; Buse Çaloğlu; Barış Binay
Journal:  Protein J       Date:  2021-06-07       Impact factor: 2.371

  6 in total

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