| Literature DB >> 32966656 |
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Year: 2020 PMID: 32966656 PMCID: PMC7537253 DOI: 10.1002/jmv.26542
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 20.693
Distribution of amino acids in structural proteins of SARS‐CoV‐2, energy expenditure in terms of number of ATPs to synthesize viral RNA, viral proteins, and burden of eight essential amino acids on human body in generating virus
| Viral structural proteins | ATPs for each NEAA | Nutritional burden of EAA per virus | Viral genome | ||||
|---|---|---|---|---|---|---|---|
| S | E | M | N | ||||
| Number of AAs per protein | |||||||
| NEAA | |||||||
| Glycine | 82 | 1 | 14 | 43 | 11.7 | NA | NA |
| Proline | 58 | 2 | 5 | 28 | 20.3 | NA | NA |
| Alanine | 79 | 4 | 19 | 37 | 11.7 | NA | NA |
| Cysteine | 40 | 3 | 4 | 0 | 24.7 | NA | NA |
| Tyrosine | 54 | 4 | 9 | 11 | 50 | NA | NA |
| Histidine | 17 | 0 | 5 | 4 | 38.3 | NA | NA |
| Arginine | 42 | 3 | 14 | 29 | 27.3 | NA | NA |
| Glutamine | 62 | 0 | 4 | 35 | 16.3 | NA | NA |
| Asparagine | 88 | 5 | 11 | 22 | 14.7 | NA | NA |
| Glutamate | 48 | 2 | 7 | 12 | 15.3 | NA | NA |
| Aspartate | 62 | 1 | 6 | 24 | 12.7 | NA | NA |
| Serine | 99 | 8 | 15 | 37 | 11.7 | NA | NA |
| EAA | |||||||
| Valine | 97 | 13 | 12 | 8 | NA | 54736 | |
| Leucine | 108 | 14 | 35 | 27 | NA | 121722 | |
| Isoleucine | 76 | 3 | 20 | 14 | NA | 71314 | |
| Methionine | 14 | 1 | 4 | 7 | NA | 17092 | |
| Phenylalanine | 77 | 5 | 11 | 13 | NA | 51154 | |
| Tryptophan | 12 | 0 | 7 | 5 | NA | 21714 | |
| Threonine | 97 | 4 | 13 | 32 | NA | 73790 | |
| Lysine | 61 | 2 | 7 | 31 | NA | 51720 | |
| Number of AAs or NTs per molecule | 1,273 | 75 | 222 | 419 | NA | NA | 29,881 |
| ATPs toward material | 13,531 | 666 | 2,196 | 4,815 | NA | NA | 1,374,526 |
| ATPs toward synthesis | 5,092 | 300 | 888 | 1,676 | NA | NA | 59,762 |
| Number of molecules per virus | 222 | 74 | 2,200 | 730 | NA | NA | 1 |
Abbreviations: E, envelope protein; EAA, essential amino acid; M, membrane protein; N, nucleocapsid protein; NA, not applicable; NEAA, nonessential amino acid; NT, nucleotide; S, spike protein; SARS‐CoV‐2, severe acute respiratory syndrome coronavirus‐2.
Burden of EAA on the human host is calculated in terms of number of EAAs stript per virus particle.
Calculated from GenBank: MN988668.1 at https://www.ncbi.nlm.nih.gov/nuccore/MN988668.