| Literature DB >> 32964029 |
Liangjun Yang1, Zhipeng Hu2, Jiajie Zhu1, Qiting Liang3, Hengli Zhou3, Jiali Li3, Xiangzhen Fan3, Ziming Zhao4, Huafeng Pan3, Baoying Fei1.
Abstract
This study was aimed at elucidating the potential mechanisms of quercetin in the treatment of gastric cancer (GC). A network pharmacology approach was used to analyze the targets and pathways of quercetin in treating GC. The predicted targets of quercetin against GC were obtained through database mining, and the correlation of these targets with GC was analyzed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. Next, the protein-protein interaction (PPI) network was constructed, and overall survival (OS) analysis of hub targets was performed using the Kaplan-Meier Plotter online tool. Finally, the mechanism was further analyzed via molecular docking of quercetin with the hub targets. Thirty-six quercetin-related genes were identified, 15 of which overlapped with GC-related targets. These targets were further mapped to 319 GO biological process terms and 10 remarkable pathways. In the PPI network analysis, six hub targets were identified, including AKT1, EGFR, SRC, IGF1R, PTK2, and KDR. The high expression of these targets was related to poor OS in GC patients. Molecular docking analysis confirmed that quercetin can bind to these hub targets. In conclusion, this study provided a novel approach to reveal the therapeutic mechanisms of quercetin on GC, which will ease the future clinical application of quercetin in the treatment of GC.Entities:
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Year: 2020 PMID: 32964029 PMCID: PMC7486643 DOI: 10.1155/2020/3860213
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Molecular properties of quercetin.
| Property | Value |
|---|---|
| Molecular weight | 302.24 g/mol |
| PSA | 131.36 A2 |
| XLogP3 | 1.54 |
| Rotatable bonds | 1 |
| H-bond donor | 5 |
| H-bond acceptor | 7 |
| Molar refractivity | 78.03 |
| Bioavailability score | 0.55 |
Figure 1Compound-target network.
Figure 2GO analysis of target genes.
Top 10 representative pathways according to gene count.
| Pathway ID | Pathway | Corrected | Gene count | Annotated genes |
|---|---|---|---|---|
| KEGG:hsa04151 | PI3K-Akt signaling pathway | 2.34 | 9 | AKT1, CDK2, CDK6, EGFR, GSK3B, IGF1R, KDR, MET, PTK2 |
| KEGG:hsa05200 | Pathways in cancer | 8.86 | 9 | AKT1, CDK2, CDK6, DAPK1, EGFR, GSK3B, IGF1R, MET, PTK2 |
| KEGG:hsa04510 | Focal adhesion | 5.02 | 8 | AKT1, EGFR, GSK3B, IGF1R, KDR, MET, PTK2, SRC |
| KEGG:hsa01521 | EGFR tyrosine kinase inhibitor resistance | 1.51 | 7 | AKT1, EGFR, GSK3B, IGF1R, KDR, MET, SRC |
| KEGG:hsa05205 | Proteoglycans in cancer | 1.30 | 7 | AKT1, EGFR, IGF1R, KDR, MET, PTK2, SRC |
| KEGG:hsa04015 | Rap1 signaling pathway | 2.71 | 6 | AKT1, EGFR, IGF1R, KDR, MET, SRC |
| KEGG:hsa04012 | ErbB signaling pathway | 3.76 | 5 | AKT1, EGFR, GSK3B, PTK2, SRC |
| KEGG:hsa04068 | FoxO signaling pathway | 3.31 | 5 | AKT1, CDK2, EGFR, IGF1R, PLK1 |
| KEGG:hsa04014 | Ras signaling pathway | 5.04 | 5 | AKT1, EGFR, IGF1R, KDR, MET |
| KEGG:hsa04144 | Endocytosis | 9.94 | 5 | EGFR, IGF1R, KDR, MET, SRC |
Figure 3Target-pathway network.
Figure 4Protein-protein interaction network.
Figure 5Prognostic value of the expression of the six hub genes. Survival data were analyzed by the Kaplan–Meier Plotter database (P < 0.05). Patients showing expression above the median are indicated by the red line, whereas the black line represents expression below the median. HR represents the hazard ratio.
Vina scores and cavity information of the docking simulation pose for each targeted protein and quercetin.
| Receptors | PDB ID | Vina score | Cavity size | Center | Size | ||||
|---|---|---|---|---|---|---|---|---|---|
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| AKT1 | 6s9x | -9.7 | 2347 | 2 | 8 | 13 | 32 | 27 | 35 |
| EGFR | 6s9b | -7.9 | 1392 | -54 | 30 | -1 | 35 | 35 | 21 |
| SCR | 6ate | -10.1 | 717 | -2 | -34 | 9 | 27 | 21 | 21 |
| IGF1R | 5fxr | -8.1 | 844 | 17 | -6 | 52 | 27 | 21 | 21 |
| PTK2 | 2aeh | -8.5 | 2041 | 8 | 122 | 22 | 31 | 29 | 31 |
| KDR | 6gqo | -9.4 | 1084 | 17 | 2 | 9 | 21 | 21 | 21 |
Figure 6Docking results of quercetin and the six hub proteins.