| Literature DB >> 32962239 |
Begüm Nurpelin Sağlık1,2, Derya Osmaniye1,2, Ulviye Acar Çevik1,2, Serkan Levent1,2, Betül Kaya Çavuşoğlu3, Yusuf Özkay1,2, Zafer Asım Kaplancıklı1.
Abstract
Dementia is a neurological condition commonly correlated with Alzheimer's disease (AD), and it is seen with many other central nervous system (CNS) disorders. The restricted number of medications is not appropriate to offer enough relief to enhance the quality of life of patients suffering from this symptom; thus, all therapeutic choices should be carefully assessed. In this study, new thiazolylhydrazone derivatives (2a-2l) were designed and synthesized based on the cholinergic hypothesis. Their chemical structures were confirmed by 1H NMR, 13C NMR, and HRMS spectrometric techniques. The ADME (absorption, distribution, metabolism, elimination) parameters of the synthesized compounds were predicted by using QikProp 4.8 software. It was concluded that all compounds presented satisfactory drug-like characteristics. Furthermore, their inhibitory activities against acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) in vitro were also tested by modified the Ellman spectrophotometric method. According to the results, all compounds showed a weak inhibitory effect on BChE. On the other hand, most of the compounds (2a, 2b, 2d, 2e, 2g, 2i, and 2j) had a certain AChE inhibitory activity, and the IC50 values of them were calculated as 0.063 ± 0.003, 0.056 ± 0.002, 0.147 ± 0.006, 0.040 ± 0.001, 0.031 ± 0.001, 0.028 ± 0.001, and 0.138 ± 0.005 µM, respectively. Among these derivatives, compound 2i was found to be the most active agent in the series with an IC50 value of 0.028 ± 0.001 µM, which indicated an inhibition profile at a similar rate as the reference drug, donepezil. The potential binding modes of compounds 2a, 2b, 2e, 2g, and 2i with AChE were investigated and compared with each other by the molecular docking studies. The results showed that these compounds were strongly bound up with the AChE enzyme active site with the optimal conformations.Entities:
Keywords: ADME parameters; Alzheimer’s disease; anticholinesterase enzyme activity; molecular docking; thiazole
Mesh:
Substances:
Year: 2020 PMID: 32962239 PMCID: PMC7570694 DOI: 10.3390/molecules25184312
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The chemical parts of the target compounds 2a–2l according to the binding to the catalytic anionic site (CAS) and peripheral anionic binding site (PAS) regions.
Scheme 1Synthesis way of the compounds 2a–2l.
% Inhibition and IC50 values of the synthesized compounds, donepezil and tacrine against AChE and BChE enzymes.
| Compounds | AChE % Inhibition | AChE | BChE % Inhibition | BChE | ||
|---|---|---|---|---|---|---|
| 10−3 M | 10−4 M | 10−3 M | 10−4 M | |||
|
| 93.425 ± 1.652 | 90.465 ± 1.322 | 0.063 ± 0.003 | 52.380 ± 0.935 | 42.466 ± 0.978 | >100 |
|
| 90.285 ± 1.451 | 82.151 ± 1.478 | 0.056 ± 0.002 | 55.488 ± 0.875 | 40.541 ± 0.710 | >100 |
|
| 78.215 ± 1.025 | 45.108 ± 0.971 | >100 | 43.612 ± 0.955 | 32.466 ± 0.721 | >1000 |
|
| 89.462 ± 2.041 | 82.445 ± 1.695 | 0.147 ± 0.006 | 51.950 ± 0.994 | 43.795 ± 0.895 | >100 |
|
| 90.611 ± 1.815 | 85.387 ± 1.730 | 0.040 ± 0.001 | 60.150 ± 1.039 | 41.575 ± 0.907 | >100 |
|
| 71.658 ± 1.395 | 40.487 ± 0.890 | >100 | 40.858 ± 0.895 | 31.495 ± 0.820 | >1000 |
|
| 93.461 ± 1.632 | 88.347 ± 1.604 | 0.031 ± 0.001 | 63.515 ± 1.155 | 40.388 ± 0.845 | >100 |
|
| 77.561 ± 1.758 | 41.947 ± 0.976 | >100 | 45.795 ± 0.926 | 34.306 ± 0.738 | >1000 |
|
| 95.207 ± 1.502 | 92.130 ± 1.798 | 0.028 ± 0.001 | 65.015 ± 1.470 | 41.518 ± 0.870 | >100 |
|
| 91.326 ± 2.107 | 84.945 ± 1.369 | 0.138 ± 0.005 | 50.811 ± 0.988 | 39.628 ± 0.865 | >100 |
|
| 65.298 ± 1.045 | 40.825 ± 0.940 | >100 | 40.171 ± 0.902 | 25.631 ± 0.633 | >1000 |
|
| 62.797 ± 1.277 | 35.369 ± 0.895 | >100 | 38.654 ± 0.815 | 23.208 ± 0.759 | >1000 |
|
| 99.254 ± 2.104 | 97.426 ± 1.890 | 0.021 ± 0.001 | - | - | - |
|
| - | - | - | 98.255 ± 1.895 | 95.465 ± 1.344 | 0.006 ± 0.0002 |
Figure 2(A) Lineweaver–Burk plots for the inhibition of AChE by compound 2i. [S], substrate concentration (µM); V, reaction velocity (1/V (abs/min)−1). Inhibitor concentrations are shown at the left. (B) Secondary plot for the calculation of the steady-state inhibition constant (Ki) of compound 2i. Ki was calculated as 0.025 µM.
Calculated ADME (absorption, distribution, metabolism, elimination) parameters of compounds 2a–2l.
| Comp. | MW | RB | DM | MV | DHB | AHB | PSA | logP | logS | PCaco | logBB | PMDCK | CNS | PM | %HOA | VRF | VRT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| 363.357 | 5 | 6.352 | 1073.112 | 2 | 4.750 | 57.634 | 4.295 | −6.085 | 1363.075 | −0.292 | 5986.232 | 0 | 2 | 100 | 0 | 1 |
|
| 363.357 | 5 | 8.087 | 1073.112 | 2 | 4.750 | 57.634 | 4.295 | −6.085 | 1363.095 | −0.292 | 5986.324 | 0 | 2 | 100 | 0 | 1 |
|
| 379.356 | 6 | 6.600 | 1090.479 | 3 | 5.500 | 77.329 | 3.641 | −5.694 | 602.692 | −0.756 | 2477.781 | 1 | 3 | 100 | 0 | 0 |
|
| 377.383 | 5 | 7.236 | 1122.809 | 1 | 4.750 | 42.093 | 5.142 | −6.596 | 4525.117 | 0.293 | 10,000 | 1 | 2 | 100 | 1 | 1 |
|
| 377.383 | 5 | 6.313 | 1113.128 | 1 | 4.750 | 43.433 | 5.066 | −6.219 | 4525.117 | 0.313 | 10,000 | 1 | 2 | 100 | 1 | 1 |
|
| 407.410 | 6 | 5.347 | 1189.498 | 1 | 5.500 | 50.440 | 5.192 | −6.655 | 4525.108 | 0.231 | 10,000 | 1 | 3 | 100 | 1 | 1 |
|
| 407.410 | 6 | 7.535 | 1179.309 | 1 | 5.500 | 51.624 | 5.098 | −6.351 | 4525.108 | 0.245 | 10,000 | 1 | 3 | 100 | 1 | 1 |
|
| 391.367 | 4 | 7.047 | 1084.671 | 1 | 5.500 | 53.698 | 4.576 | −5.904 | 4526.666 | 0.374 | 10,000 | 1 | 1 | 100 | 0 | 1 |
|
| 393.383 | 6 | 7.551 | 1142.737 | 2 | 5.500 | 65.447 | 4.388 | −6.249 | 1454.418 | −0.334 | 6420.985 | 0 | 3 | 100 | 0 | 1 |
|
| 393.383 | 6 | 6.825 | 1132.218 | 2 | 5.500 | 64.300 | 4.374 | −5.890 | 1674.494 | −0.220 | 7477.311 | 0 | 3 | 100 | 0 | 1 |
|
| 437.436 | 7 | 7.596 | 1265.955 | 1 | 6.250 | 59.089 | 5.273 | −6.619 | 4525.108 | 0.177 | 10,000 | 1 | 4 | 100 | 1 | 1 |
|
| 423.409 | 7 | 5.877 | 1207.466 | 2 | 6.250 | 73.261 | 4.414 | −6.177 | 1428.142 | −0.386 | 6295.69 | 0 | 4 | 100 | 0 | 1 |
MW: Molecular weight RB: Number of rotatable bonds (recommended value: 0–15) DM: Computed dipole moment (recommended value: 1–12.5) MV: Total solvent-accessible volume (recommended value: 500–2000) DHB: Estimated number of hydrogen bond donors (recommended value: 0–6) AHB: Estimated number of hydrogen bond acceptors (recommended value: 2–20) PSA: Van der Waals surface area of polar nitrogen and oxygen atoms and carbonyl carbon atoms (recommended value: 7–200) logP: Predicted octanol/water partition coefficient (recommended value: −2–6.5) logS: Predicted aqueous solubility (recommended value: −6.5–0.5) PCaco: Predicted apparent Caco-2 cell permeability (recommended value: <25 poor, >500 great) logBB: Predicted brain/blood partition coefficient (recommended value: −3–1.2) PMDCK: Predicted apparent MDCK cell permeability (recommended value: <25 poor, >500 great) CNS: Predicted central nervous system activity on a −2 (inactive) to +2 (active) scale (recommended value: −2 (inactive), +2 (active)) PM: Number of likely metabolic reactions (recommended value: 1–8) %HOA: Predicted human oral absorption percent (recommended value: >80% is high, <25% is poor) VRF: Number of violations of Lipinski’s rule of five. The rules are: MW < 500, logP < 5, DHB ≤ 5, AHB≤ 10, Positive PSA value. VRT: Number of violations of Jorgensen’s rule of three. The three rules are: logS > −5.7, PCaco > 22 nm/s, PM < 7.
Type of blood–brain barrier (BBB) penetration of compound 2i.
| Classification | Type of BBB Permeation | Compound | Type of BBB Permeation |
|---|---|---|---|
|
| High BBB permeation |
| |
|
| Low BBB permeation | ||
|
| BBB permeation uncertain |
Figure 3The CAS and PAS regions of AChE enzyme along with the important amino acids.
Figure 4The two- (A) and three-dimensional (B) interacting mode of compound 2i in the active region of AChE. The inhibitor and important residues in the active site of enzyme are presented by a tube model colored with purple and aquamarine, respectively (AChE PDB Code: 4EY7).
Figure 5The van der Waals (A) and electrostatic interactions (B) of compound 2i with an active region of AChE. The active ligand has a lot of favorable van der Waals and electrostatic interactions. The residues are colored (blue, red, and pink) according to the distance from ligand by per-residue interaction panel.