| Literature DB >> 32951271 |
Amin Jalilvand1, Kheirollah Yari1,2, Mozaffar Aznab3, Zohreh Rahimi1, Iman Salahshouri Far4, Pantea Mohammadi1.
Abstract
OBJECTIVE: The current research was conducted to study the association between the SNP309 and del1518 polymorphisms with the breast cancer in the patients with the Kurdish ethnic background from western Iran. Also, a systematic review of the relevant case-control studies on the MDM2 polymorphisms in the patients with breast cancer was performed.Entities:
Keywords: Breast cancer; Del1518 variant; Iranian population; MDM2 gene; SNP309 polymorphism; Systematic review
Mesh:
Substances:
Year: 2020 PMID: 32951271 PMCID: PMC7755803 DOI: 10.1002/jcla.23529
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 3.124
Figure 1PRISMA flow diagram of article selection for systematic review on the MDM2 variations in breast cancer patients
Figure 2Gel (agarose) electrophoresis of PCR products for del1518 and PCR‐RFLP for SNP309 of the MDM2 gene. (A) Lane 1 shows del/del genotype; lanes 2, 4, 5, and 6 show ins/ins genotypes; and lane 3 shows ins/del genotype. (B) Lanes 1 and 2 show TG genotypes, and lanes 3 and 4 demonstrate GG and TT genotypes, respectively. Lane 7 in (A) and lane 5 in (B) show 100 bp DNA ladder. The map showed the 100‐bp upstream and downstream of the SNP309
Figure 3Sequencing results of SNP309 and del1518 in case patients. 1. SNP309 positions were marked with the arrows for TT (1.A), TG (1.B), and GG (1.C) genotypes. 2. The sequence of 40‐bp del1518 was showed in the box in ins/ins genotype (2.A). The Figure 2.B shows the del/del genotype of 40‐bp del1518. Sequencing results were viewed in Chromas (Version 2.6.6)
Association of SNP309 with HER2, P53, and family history of other cancers’ characteristics in breast cancer patients
| Variable | SNP309 | SNP309 | ||||
|---|---|---|---|---|---|---|
| TG | TT + GG |
| GG | TT + TG |
| |
| Family history of other types of cancer cancer | ||||||
| No | 43 | 31 | .142 (2.155) | 13 | 61 | .049 (3.869) |
| Yes | 7 | 11 | 7 | 11 | ||
| P53 | ||||||
| Positive | 23 | 12 | .018 (5.595) | 7 | 28 | .152 (2.054) |
| Negative | 14 | 23 | 13 | 24 | ||
| HER2 | ||||||
| Positive | 25 | 14 | .031 (4.677) | 8 | 31 | .268 (1.226) |
| Negative | 15 | 23 | 12 | 26 | ||
P‐values were calculated with the chi‐square test.
Properties of included studied polymorphisms in the systematic review
| RsID | Name | Polymorphism | Risk allele | Position | Consequence in | Main TF‐related SNP | Frequency of minor allele |
|---|---|---|---|---|---|---|---|
| Rs150550023 | Del1518 | 40‐bp ins/del | Deletion | chr12:68806996‐68807065 | 2KB Upstream | RORA, MEF2A, MIZF | 0.37 |
| Rs2870820 | SNP55 | C → T | T | chr12:68808546 | Intron 1‐2 | Sp1 | 0.23 |
| Rs117039649 | SNP285 | G → C | C | chr12:68808776 | Intron 1‐2 | Sp1 | 0.01 |
| Rs2279744 | SNP309, G2580T | T → G | G | chr12:68808800 | Intron 1‐2 | Sp1 | 0.36 |
| Rs1196333 | SNP344 | T → A | A | chr12:68808835 | Intron 1‐2 | TFAP2A | 0.04 |
| ND | SNP443 | G → T | T | chr12:68808934 | Intron 1‐2 | NR | NR |
| Rs769412 | SNP354 | A → G | G | chr12:68839435 | Exon 11 | NR | 0.07 |
| Rs937283 | G2164A | A → G | G | chr12:68808384 | 5 Prime UTR | NR | 0.30 |
Minor alleles were considered as the risk allele.
Based on GRCh38.p12 assembly.
1000 genome.
Rs3730485 based on GRCh38.p7 assembly.
Based on the frequency of GenomAD.
Synonymous mutation.
Figure 4The positions of the all assessed MDM2 variations in the current systematic review on breast cancer patients
All investigated MDM2 variations in the case‐control studies on the BC patients
| rs# (variation name) | Country (population1) | Ethnicity | Sample source | No. of case/control | Patients | Control group | Genotyping method(s) | Association with | References | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Type | Gender | Match with BC | Properties | Risk2 | IHC & outcome3 | Age of onset4 | |||||||
| rs3730485 (del1518) | China (Nanjing And Southeast) | Chinese, Unrelated Ethnic Han | Blood | 366/605 | BC | Female | Age, gender | Cancer‐free | PCR | Not significant | NR | Negative |
|
| Iran (Kermanshah Province, West) | Kurdish | Blood | 100/100 | BC | 98 Females, 2 Males | Age, Area Of Residence | Healthy, Cancer‐Free | PCR | Not Significant | Negative | Negative | Present Study | |
| Iran (Southeast) | NR | Blood | 236/203 | BC | NR | Age | Cancer‐Free | PCR | Higher Risk | Negative | Negative |
| |
| Mexico (Guadalajara City) | NR | Blood | 742/345 | BC | Female | Gender, Area Of Residence | Healthy | PCR | Higher Risk | NR | NR |
| |
| Norway (CONOR) Study | NR | Blood | 1717/1872 | BC | Female | Age, Gender, Area Of Residence, Same Cohort | Healthy, Cancer‐Free | PCR | Not Significant | NR | NR |
| |
| rs2870820 (SNP55) | Norway (CONOR) Study | NR | Blood | 1707/1858 | BC | Female | Age, Gender, Same Cohort | Healthy | LightSNiP | Not Significant | NR | Negative |
|
| rs117039649 (SNP285) | Austria | Austrian | Blood | 406/254 | BC | Female | Gender, Geography | benign gynecological lesion/Healthy | Real‐Time PCR | Not Significant | Negative | Negative |
|
| Mixed (Norway And Netherlands) | Mixed (Norwegian And Dutch) | Blood & Cancerious Breast Tissue | 1973/2518 |
1. BC 2. BC, ER+ | NR | Same Countries | Healthy | Sequencing | NR | NR |
1. NR 2. Negative |
| |
| Norway (CONOR) Study | NR | Blood | 1717/1872 | BC | Female | Age, Gender, Area Of Residence, Same Cohort | Healthy | LightSnip | Not Significant | NR | NR |
| |
| Poland (Wielkopolska) | Caucasian | Blood | 468/550 | BC | Female | Gender, Geography, Ethnicity | Healthy | Sequencing | Lower Risk | Negative | NR |
| |
| Scotland |
Scottish Caucasian | Blood | 299/275 | BC | Female | Gender, Geography, Ethnicity | Cancer‐Free | Sequencing | NR | NR | Negative |
| |
| rs2279744 (SNP309) | Austria | Austrian | Blood | 406/254 | BC | Female | Gender, Geography | Benign gynecological lesion/Healthy | Real‐Time PCR | Not Significant | P53, Ki67 | Positive |
|
| Brazil | NR | Blood/ Non‐Tumoral Tissue | 39/186 | BC, R337H Mutation Carriers | NR | NR | Cancer‐Free, No Family History Of Cancer, Without The R337H Mutation | Real‐Time PCR | NR | Negative | NR |
| |
| Canada | Caucasian | Blood | 38/379 | BC, Pre‐Menopasual | Female | NR | NR | Sequencing | Not Significant | NR | NR |
| |
| China (Shanghai) | NR | Blood |
1. 402/84 2. 402/605 | BC | Female |
1. Gender, Geography 2. Gender | Healthy, Cancer‐Free | Sequencing |
1. Higher Risk 2. Higher Risk | Negative | Positive |
| |
| China (Nanjing And Southeast) | Chinese, Unrelated Ethnic Han | Blood | 366/605 | BC | Female | Age, Gender | Cancer‐Free | PIRA‐PCR, Sequencing | Not Significant | NR | Negative |
| |
| Czech Republic | NR | Tissue/ Blood | 158/149 | BC | NR | NR | Mixed Of Healthy And Ischemic Disease (Cancer‐Free) | PCR‐RFLP | Not Significant | Negative | Negative |
| |
| England (WCGS) | NR | NR | 59/102 | BC/ With BRCA1 Mutations | Female | NR | NR | Pyrosequencing | NR | NR | Negative |
| |
| England (Anglo‐Saxon Population) | British | NR | 351/258 | BC | Female | Gender, Geography | Cancer‐Free | Allele Specific PCR | Not Significant | NR | Negative |
| |
| German | NR | Blood | 549/1065 | Familial BC, Lacking BRCA1&2 Mutations | Female | Ethnicity | Healthy | Real‐Time PCR, Sequencing | Not Significant | NR | Negative |
| |
| India (North) | NR | Blood | 100/100 | BC, IDC | NR | Age | Healthy, Cancer‐Free | Allele Specific PCR | Not Significant | HER2, Distant Metastasis | NR |
| |
| India (Lucknow, North) | NR | Blood | 104/105 | BC | Female | Gender, Geography, Ethnicity | Tumor/Cancer‐Free | ARMS‐PCR | Not Significant | NR | NR |
| |
| Iran (Kermanshah Province, West) | Kurdish | Blood | 100/100 | BC | 98 Females, 2 Males | Age, Area of residence | Healthy, Cancer‐Free | PCR | Lower Risk | HER2, P53, Family history of cancer | Negative | Present Study | |
| Iran (Mashhad City, Southeast) | NR | Blood | 128/126 | BC | Female | Age, Gender | Healthy | ARMS‐PCR | Not Significant5 | Negative | Positive |
| |
| Israel | Ashkenazi–Jewish (AJ) Origin | NR | 187/138 | BC, BRCA1/2 Mutation Non‐Carrier | Female | Gender | Cancer‐Free | MALDI‐TOF | Not Significant | NR | Negative |
| |
| KSA | Arabian | Blood | 100/100 | BC | Female | Gender, Ethnicity | Healthy | Real‐Time PCR | Higher Risk | Negative | Negative |
| |
| Kyrgyzstan | Kyrgyz | Blood | 117/102 | BC | Female | Age, Gender | BC‐Free | PCR‐RFLP | Not Significant | NR | NR |
| |
| Mixed (Norway And Netherlands) | Mixed (Norwegian And Dutch) | Blood & Cancerious Breast Tissue | 1973/2518 |
1. BC 2. BC, ER+ | NR | Same Countries | Healthy | Sequencing | Not Significant | NR |
1. NR 2. Negative |
| |
| Mixed (UK) | Scottish Caucasian | Blood | 299/182 | BC | Female | Gender, Geography, Ethnicity | Cancer‐Free | Sequencing | Not Significant | Tumour Grade, Lymph Node, NPI | Negative |
| |
| Netherlands (South–West) | NR | Blood | 343/126 | Familial BC | 340 Females, 3 Males | Geography | Heterozygous carriers of cystic fibrosis gene mutations | Sequencing | Not Significant | NR | Positive |
| |
| Norway (CONOR) Study | NR | Blood | 1717/1872 | BC | Female | Age, Gender, Area Of Residence, Same Cohort | Healthy | Lightsnip | Not Significant | NR | NR |
| |
| Poland (Wielkopolska) | Caucasian | Blood | 468/550 | BC | Female | Gender, Geographically, Ethnicity | Healthy | PCR‐RFLP, Sequencing | Not Significant | Negative | NR |
| |
| Sweden (South‐East Sweden Health Care Region) | NR | Blood/ Normal Lymph Node Tissues | 123/146 | BC, Young Women | Female | Gender, Geography | Healthy | Pyrosequencing | Not Significant | Negative | NR |
| |
| Taiwan | Asian Taiwanese, Not Immigrants From America Or Europe. | Blood | 255/324 | BC | 254 Females, 1 Male | ‐ | Healthy, Cancer‐Free | PCR‐RFLP, Sequencing | Higher Risk | NR | NR |
| |
| Taiwan | Taiwanes | Blood | 124/97 | Sporadic BC | Female | Gender, Ethnicity | Healthy, Cancer‐Free | PCR‐RFLP, Sequencing | Higher Risk | NR | Positive |
| |
| Turkey | NR | Blood | 110/138 | BC | Female | Age, Gender | Healthy | PCR‐RFLP | Higher Risk | Negative | NR |
| |
| Turkey | NR | Blood | 147/120 | Familial BC | Female | Gender | Healthy | PCR‐RFLP | Higher Risk | NR | NR |
| |
| Turkey | Turkish | Blood | 223/149 | BC (Ductal Carcinoma) | Female | Age, Gender, Ethnicity | Healthy, Cancer‐Free | PCR‐RFLP | Not Significant | NR | NR |
| |
| US (NHS Study) | NR | Blood | 1519/2271 | BC | Female | Age, Menopausal Status, Recent Postmenopausal Hormone (PMH) use | Healthy | PCR‐RFLP | Not Significant | NR | NR |
| |
| US (Baltimore) |
1. African American Descent 2. Caucasian White Descent (Not Hispanic White) | Blood & Cancerious & Noncancerious Breast Tissue |
1. 165/178 2. 125/136 | BC | Female | Age, Gender, Geography, Race | Cancer‐Free | Real‐Time PCR | Not Significant | Tumor P53 Expression | Negative |
| |
| US (Carolina Breast Cancer Study) |
1. African‐Americans 2. Whites | Blood |
1. 767/680 2. 1270/1133 | BC | Female | NR | NR | Real‐Time Pcr | Not Significant | ER, PgR | Negative |
| |
| rs1196333 (SNP344) | Mixed (Norway And Netherlands) | Mixed (Norwegian And Dutch | Blood | 1271/2954 | BC | Female | NR | Healthy | Sequencing | Not Significant | NR | Negative |
|
| Scotland | Scottish Caucasian | Blood | 299/275 | BC | Female | Geography, Ethnicity | Cancer‐Free | Sequencing | Not Significant | NR | Negative |
| |
| rs769412 (SNP354) | US (Baltimore City) |
1. African American Descent 2. Caucasian White Descent (Not Hispanic White) | Blood & Cancerious & Noncancerious Tissue |
1. 166/176 2. 127/134 | BC | Female | Age, Gender, Race | BC‐Free | Real‐Time PCR |
1. Higher Risk 2. Not Significant | NR | Negative |
|
| (SNP443) | Scotland | Scottish Caucasian | Blood | 299/275 | BC | Female | Geography, Ethnicity | Cancer‐Free | Sequencing | Not Significant | NR | Negative |
|
| rs937283 | China (Central Chinese Population) | NR | Blood | 480/500 | BC | Female | Age, Gender, Smoking Status, Drinking Status | Healthy, Cancer‐Free | PCR‐RFLP, Sequencing | Higher Risk | NR | NR |
|
1. Region of the hospital‐based studies was not reported. 2. Combined effect with other SNPs and classified groups (based on demographic characteristics and clinical features) were not reported. 3. Association between IHC reports and clinical/outcome features with distribution of alleles and genotypes in BC patients. 4. Association with age of incidence in breast cancer patients was considered for each variation alone, and it was not reported in cases of haplotypes or in the subgroup of other variants. Also, age similarity was not included. 5. According to the stated result in the article, no significant association is reported (P = .048).
Abbreviations: ARMS, Amplification Refractory Mutation System; BC, Breast Cancer; CONOR, Cohort of Norway; ER, Estrogen Receptor; IDC, Invasive Ductal Carcinoma; IHC, Immunohistochemistry; MALDI‐TOF, Matrix Assisted Laser Desorption Ionization‐Time of Flight; NPI, Nottingham Prognostic Index; NR, Not Reported; PgR, Progesterone Receptor; PIRA, Primer‐Introduced Restriction Analysis; RFLP, Restriction Fragment Length Polymorphism; WCGS, Wessex Clinical Genetics Service.