Literature DB >> 32949024

Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation.

Ning Zhang1, Yong-Gang Chang1,2, Roger Tseng1,3, Sergey Ovchinnikov4, Rakefet Schwarz5, Andy LiWang1,6,7.   

Abstract

Biofilms are accumulations of microorganisms embedded in extracellular matrices that protect against external factors and stressful environments. Cyanobacterial biofilms are ubiquitous and have potential for treatment of wastewater and sustainable production of biofuels. But the underlying mechanisms regulating cyanobacterial biofilm formation are unclear. Here, we report the solution NMR structure of a protein, Se0862, conserved across diverse cyanobacterial species and involved in regulation of biofilm formation in the cyanobacterium Synechococcus elongatus PCC 7942. Se0862 is a class α+β protein with ααββββαα topology and roll architecture, consisting of a four-stranded β-sheet that is flanked by four α-helices on one side. Conserved surface residues constitute a hydrophobic pocket and charged regions that are likely also present in Se0862 orthologs.
© 2020 The Protein Society.

Entities:  

Keywords:  NMR spectroscopy; S. elongatus PCC 7942; biofilm; cyanobacteria; protein structure

Year:  2020        PMID: 32949024      PMCID: PMC7586914          DOI: 10.1002/pro.3952

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  35 in total

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Review 2.  Microbial community composition and function in wastewater treatment plants.

Authors:  Michael Wagner; Alexander Loy; Regina Nogueira; Ulrike Purkhold; Natuschka Lee; Holger Daims
Journal:  Antonie Van Leeuwenhoek       Date:  2002-08       Impact factor: 2.271

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Authors:  Evgeny Krissinel; Kim Henrick
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

4.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

5.  Type 4 pili are dispensable for biofilm development in the cyanobacterium Synechococcus elongatus.

Authors:  Elad Nagar; Shaul Zilberman; Eleonora Sendersky; Ryan Simkovsky; Eyal Shimoni; Diana Gershtein; Moshe Herzberg; Susan S Golden; Rakefet Schwarz
Journal:  Environ Microbiol       Date:  2017-07-13       Impact factor: 5.491

6.  Axenic Biofilm Formation and Aggregation by Synechocystis sp. Strain PCC 6803 Are Induced by Changes in Nutrient Concentration and Require Cell Surface Structures.

Authors:  Rey Allen; Bruce E Rittmann; Roy Curtiss
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

7.  A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics.

Authors:  Mario Schubert; Dirk Labudde; Hartmut Oschkinat; Peter Schmieder
Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

8.  Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2013-06-02       Impact factor: 2.835

9.  Phototrophic biofilms and their potential applications.

Authors:  G Roeselers; M C M van Loosdrecht; G Muyzer
Journal:  J Appl Phycol       Date:  2007-08-12       Impact factor: 3.215

10.  Retraction of DNA-bound type IV competence pili initiates DNA uptake during natural transformation in Vibrio cholerae.

Authors:  Courtney K Ellison; Triana N Dalia; Alfredo Vidal Ceballos; Joseph Che-Yen Wang; Nicolas Biais; Yves V Brun; Ankur B Dalia
Journal:  Nat Microbiol       Date:  2018-06-11       Impact factor: 17.745

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  5 in total

1.  Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation.

Authors:  Ning Zhang; Yong-Gang Chang; Roger Tseng; Sergey Ovchinnikov; Rakefet Schwarz; Andy LiWang
Journal:  Protein Sci       Date:  2020-10-24       Impact factor: 6.725

2.  Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2.

Authors:  Yuanpeng Janet Huang; Ning Zhang; Beate Bersch; Krzysztof Fidelis; Masayori Inouye; Yojiro Ishida; Andriy Kryshtafovych; Naohiro Kobayashi; Yutaka Kuroda; Gaohua Liu; Andy LiWang; G V T Swapna; Nan Wu; Toshio Yamazaki; Gaetano T Montelione
Journal:  Proteins       Date:  2021-10-19

3.  A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome.

Authors:  Yevgeni Yegorov; Eleonora Sendersky; Shaul Zilberman; Elad Nagar; Hiba Waldman Ben-Asher; Eyal Shimoni; Ryan Simkovsky; Susan S Golden; Andy LiWang; Rakefet Schwarz
Journal:  mBio       Date:  2021-03-16       Impact factor: 7.867

4.  Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains.

Authors:  Marie Adomako; Dustin Ernst; Ryan Simkovsky; Yi-Yun Chao; Jingtong Wang; Mingxu Fang; Christiane Bouchier; Rocio Lopez-Igual; Didier Mazel; Muriel Gugger; Susan S Golden
Journal:  mBio       Date:  2022-04-27       Impact factor: 7.786

5.  Transcriptomic and Phenomic Investigations Reveal Elements in Biofilm Repression and Formation in the Cyanobacterium Synechococcus elongatus PCC 7942.

Authors:  Ryan Simkovsky; Rami Parnasa; Jingtong Wang; Elad Nagar; Eli Zecharia; Shiran Suban; Yevgeni Yegorov; Boris Veltman; Eleonora Sendersky; Rakefet Schwarz; Susan S Golden
Journal:  Front Microbiol       Date:  2022-06-23       Impact factor: 6.064

  5 in total

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