| Literature DB >> 32948823 |
Mingjing Wang1,2, Weiyi Liu1, Yonggang Xu1, Hongzhi Wang1, Xiaoqing Guo1, Xiaoqing Ding3, Richeng Quan1, Haiyan Chen3, Shirong Zhu1,4, Teng Fan1,2, Yujin Li1,2, Xuebin Zhang1,2, Yan Sun1,4, Xiaomei Hu5.
Abstract
The aim of this study was to develop a model that could be used to forecast the bleeding risk of ITP based on proinflammatory and anti-inflammatory factors. One hundred ITP patients were recruited to build a new predictive nomogram, another eighty-eight ITP patients were enrolled as validation cohort, and data were collected from January 2016 to January 2019. Four demographic characteristics and fifteen clinical characteristics were taken into account. Eleven cytokines (IFN-γ, IL-1, IL-4, IL-6, IL-8, IL-10, IL-17A, IL-22, IL-23, TNF-α and TGF-β) were used to study and the levels of them were detected by using a cytometric bead array (CBA) human inflammation kit. The least absolute shrinkage and selection operator regression model was used to optimize feature selection. Multivariate logistic regression analysis was applied to build a new predictive nomogram based on the results of the least absolute shrinkage and selection operator regress ion model. The application of C-index, ROC curve, calibration plot, and decision curve analyses were used to assess the discrimination, calibration, and clinical practicability of the predictive model. Bootstrapping validation was used for testing and verifying the predictive model. After feature selection, cytokines IL-1, IL-6, IL-8, IL-23 and TGF-β were excluded, cytokines IFN-γ, IL-4, IL-10, IL-17A, IL-22, TGF-β, the count of PLT and the length of time of ITP were used as predictive factors in the predictive nomogram. The model showed good discrimination with a C-index of 0.82 (95% confidence interval 0.73376-0.90 624) in training cohortn and 0.89 (95% CI 0.868, 0.902) in validation cohort, an AUC of 0.795 in training cohort, 0.94 in validation cohort and good calibration. A high C-index value of 0.66 was reached in the interval validation assessment. Decision curve analysis showed that the bleeding risk nomogram was clinically useful when intervention was decided at the possibility threshold of 16-84%. The bleeding risk model based on IFN-γ, IL-4, IL-10, IL-17A, IL-22, TGF-β, the count of PLT and the length of time of ITP could be conveniently used to predict the bleeding risk of ITP.Entities:
Year: 2020 PMID: 32948823 PMCID: PMC7501260 DOI: 10.1038/s41598-020-72275-1
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Characteristics of patients in the training and validation cohorts.
| Training cohortn (%) | Validation cohortn (%) | |||||
|---|---|---|---|---|---|---|
| Bleeding | No Bleeding | Bleeding | No Bleeding | |||
| n = 65 | n = 35 | n = 43 | n = 45 | |||
| Age | ||||||
| 18–60 | 51 (78.5) | 29 (82.9) | 0.6 | 31 (72.1) | 39 (86.7) | 0.09 |
| ≥ 60 | 14 (21.5) | 6 (17.1) | 12 (27.9) | 6 (13.3) | ||
| Gender | ||||||
| Male | 23 (35.4) | 10 (28.6) | 0.48 | 14 (32.6) | 15 (33.3) | 0.93 |
| Female | 42 (64.6) | 25 (71.4) | 29 (67.4) | 30 (66.7) | ||
| Education level | ||||||
| Primary school | 21 (32.3) | 10 (28.6) | 0.78 | 13 (30.2) | 11 (24.4) | 0.75 |
| Middle school | 26 (40) | 13 (37.1) | 14 (32.6) | 14 (31.1) | ||
| University | 18 (27.7) | 12 (34.3) | 16 (37.2) | 20 (44.4) | ||
| Occupational | ||||||
| Non-manual labor | 40 (61.5) | 23 (65.7) | 0.68 | 33 (76.7) | 31 (68.9) | 0.41 |
| Physical labor | 25 (38.5) | 12 (34.3) | 10 (23.3) | 14 (31.1) | ||
| Disease duration (months) | ||||||
| 3–12 | 11 (16.9) | 5 (14.3) | 0.73 | 21 (48.8) | 16 (35.6) | 0.21 |
| > 12 | 54 (83.1) | 30 (85.7) | 22 (51.2) | 29 (64.4) | ||
| Comorbidities | ||||||
| Hypertension | 6 (9.2) | 3 (8.5) | 0.9 | 3 (7) | 1 (2.2) | 0.45 |
| Diabetes | 1 (1.5) | 1 (2.8) | 2 (4.7) | 1 (2.2) | ||
| No comorbidities | 58 (90.3) | 31 (89.3) | 38 (88.4) | 43 (95.6) | ||
| Current use of GC | ||||||
| Yes | 40 (61.6) | 21 (60) | 0.87 | 23 (53.5) | 20 (44.4) | 0.4 |
| No | 25 (38.4) | 14 (40) | 20 (46.5) | 25 (55.6) | ||
| PLT (× 109/L) | ||||||
| < 20 | 22 (33.9) | 3 (8.6) | 0.02 | 21 (48.8) | 5 (11.1) | 0.01 |
| 20–50 | 29 (44.6) | 20 (57.1) | 15 (34.9) | 30 (66.7) | ||
| 51–80 | 14 (21.5) | 12 (34.3) | 7 (16.3) | 10 (22.2) | ||
| IFN-γ (pg/ml) | ||||||
| < 4.25 | 13 (20) | 10 (28.6) | 0.72 | 34 (79.1) | 28 (62.2) | 0.01 |
| 4.25–5.02 | 18 (27.7) | 9 (25.7) | 6 (14) | 2 (4.4) | ||
| 5.03–16.4 | 18 (27.7) | 7 (20) | 1 (2.3) | 8 (17.8) | ||
| > 16.4 | 16 (24.6) | 9 (25.7) | 2 (4.7) | 7 (15.6) | ||
| IL-1β (pg/ml) | ||||||
| < 1.57 | 15 (25.1) | 10 (28.6) | 0.48 | 22 (51.2) | 24 (53.3) | 0.92 |
| 1.57–2.84 | 18 (27.7) | 6 (17.1) | 11 (25.6) | 13 (28.9) | ||
| 2.85–125.31 | 18 (27.7) | 8 (22.9) | 3 (7) | 2 (4.4) | ||
| > 125.31 | 14 (21.5) | 11 (31.4) | 7 (16.3) | 6 (13.3) | ||
| IL-4 (pg/ml) | ||||||
| < 3.17 | 19 (29.2) | 5 (14.3) | 0.36 | 12 (27.9) | 7 (15.6) | 0.37 |
| 3.17–3.71 | 15 (25.1) | 11 (31.4) | 7 (16.3) | 6 (13.3) | ||
| 3.72–12.59 | 14 (21.5) | 10 (28.6) | 21 (48.8) | 30 (66.7) | ||
| > 12.59 | 17 (26.2) | 9 (25.7) | 3 (7) | 2 (4.4) | ||
| IL-6 (pg/ml) | ||||||
| < 6.02 | 15 (25.1) | 10 (28.6) | 0.26 | 28 (65.1) | 25 (55.6) | 0.44 |
| 6.02–8.46 | 19 (29.2) | 6 (17.1) | 2 (4.7) | 5 (11.1) | ||
| 8.47–9,855.8 | 18 (27.7) | 7 (20) | 7 (16.3) | 11 (24.4) | ||
| > 9,855.8 | 13 (20) | 12 (34.3) | 6 (14) | 4 (8.9) | ||
| IL-8 (pg/ml) | ||||||
| < 19.17 | 20 (30.8) | 5 (14.3) | 0.31 | 15 (34.9) | 13 (28.9) | 0.57 |
| 19.17–41.49 | 14 (21.5) | 10 (28.6) | 18 (41.9) | 16 (35.6) | ||
| 41.5–44,418.72 | 16 (24.6) | 9 (25.7) | 8 (18.6) | 11 (24.4) | ||
| > 44,418.72 | 15 (25.1) | 11 (31.4) | 2 (4.7) | 5 (11.1) | ||
| IL-10 (pg/ml) | ||||||
| < 3.99 | 14 (21.5) | 11 (31.4) | 0.73 | 4 (9.3) | 4 (8.9) | 0.46 |
| 3.99–4.75 | 16 (24.6) | 8 (22.9) | 17 (39.5) | 11 (24.4) | ||
| 4.76–12.98 | 19 (29.2) | 8 (22.9) | 21 (48.8) | 28 (62.2) | ||
| > 12.98 | 16 (24.7) | 8 (22.9) | 1 (2.3) | 2 (4.4) | ||
| IL-17A (pg/ml) | ||||||
| < 143.65 | 20 (30.8) | 5 (14.3) | 0.06 | 6 (14) | 7 (15.6) | 0.42 |
| 143.65–179.38 | 17 (26.2) | 8 (22.9) | 5 (11.6) | 11 (24.4) | ||
| 179.39–480.2 | 17 (26.2) | 8 (22.9) | 29 (67.4) | 25 (55.6) | ||
| > 480.2 | 11 (16.8) | 14 (40) | 3 (7) | 2 (4.4) | ||
| IL-22 (pg/ml) | ||||||
| < 5.26 | 20 (30.8) | 5 (14.3) | 0.12 | 8 (18.6) | 11 (24.4) | 0.84 |
| 5.26–6.8 | 18 (27.7) | 7 (20) | 17 (39.5) | 14 (31.1) | ||
| 6.81–2,743.68 | 14 (21.5) | 11 (31.4) | 16 (37.2) | 18 (40) | ||
| > 2,743.68 | 13 (20) | 12 (34.3) | 2 (4.7) | 2 (4.4) | ||
| IL-23 (pg/ml) | ||||||
| < 2.43 | 16 (24.6) | 9 (25.7) | 0.3 | 11 (25.6) | 15 (33.3) | 0.83 |
| 2.43–3.24 | 20 (30.8) | 5 (14.3) | 12 (27.9) | 11 (24.4) | ||
| 3.25–340.81 | 14 (21.5) | 11 (31.4) | 8 (18.6) | 9 (20) | ||
| > 340.81 | 15 (25.1) | 10 (28.6) | 12 (27.9) | 10 (22.2) | ||
| TNF-α (pg/ml) | ||||||
| < 2.24 | 19 (29.2) | 5 (14.3) | 0.29 | 13 (30.2) | 12(26.7) | 0.49 |
| 2.24–2.99 | 15 (25.1) | 11 (31.4) | 16 (37.2) | 14(31.1) | ||
| 3–115.84 | 17 (26.2) | 8 (22.9) | 11 (25.6) | 11(24.4) | ||
| > 115.84 | 14 (21.5) | 11 (31.4) | 3 (7) | 8(17.8) | ||
| TGF-β (pg/ml) | ||||||
| < 6,959.06 | 20 (30.8) | 6 (17.1) | 0.05 | 14 (32.6) | 11(24.4) | 0.01 |
| 6,959.06–12,480.82 | 18 (27.7) | 7 (20) | 19 (44.2) | 5(11.1) | ||
| 12,480.83–67,139.67 | 17 (26.2) | 8 (22.9) | 8 (18.6) | 15(33.3) | ||
| > 67,139.67 | 10 (15.3) | 14 (40) | 2 (4.7) | 14(31.1) | ||
GC glucocorticoid (Prednisone).
Figure 1Results for demographic and clinical feature selection by the LASSO binary logistic regression model. Notes The optimabest parameter (lambda) of the lasso model, which is selected by the minimum criterion for five cross verifications, shown in (A). The binomial deviance curve was plotted depended on log(lambda). According to the minimum criteria and the 1-SE criteria, dotted vertical lines were drawn at the optimal values. (B) Showed LASSO coefficient profiles of the 19 features. A coefficient profile plot was produced based on the log(lambda) sequence. Vertical line was drawn at the value selected using fivefold cross-validation, where optimal lambda resulted in eight features with nonzero coefficients. LASSO least absolute shrinkage and selection operator, SE standard error.
Predictive factors for bleeding risk in ITP.
| Intercept and variable | Prediction model | ||
|---|---|---|---|
| β | Odds ratio (95% CI) | ||
| IFN-γ | 4.71284305 | 2.88 (0.569, 16.854) | 0.00214 |
| IL-4 | − 2.35877965 | 0.41 (0.06, 2.39) | 0.03499 |
| IL-10 | − 2.16067288 | 0.115 (0.126,4.54) | 0.03162 |
| IL-17A | 0.65924361 | 1.933 (0.094,4.167 ) | 0.45221 |
| IL-22 | − 1.77017665 | 0.17 (0.033, 1.534) | 0.04587 |
| TGF-β | − 2.03386875 | 0.131 (0.142, 4.451) | 0.06987 |
| PLT | − 1.18593598 | 0.305 (0.045, 1.227) | 0.25476 |
| Time | − 0.75794663 | 0.469 (0.133, 1.513) | 0.02765 |
β is the regression coefficient of eight feathers enrolled in logistic regression model.
If β is coefficient is positive and odds ratio is above one, the feature is positively correlated with the probability of occurrence of bleeding. If β is coefficient is negative and odds ratio is below one, the feature is positively correlated with the probability of occurrence of no bleeding.
Figure 2The nomogram of bleeding risk predict model. Note To use the nomogram, an individual patient’s value is located on each variable axis, and a line is drawn upward to estimate the number of points received for each variable value. The sum of these numbers is located on the Total Points axis, and a line is drawn downward to the survival axes to determine the likelihood of bleeding.
Figure 3Calibration curves for bleeding nomogram predictions in the training cohort (A) and Validation cohort (B). Notes The x-axis represents the forecasted bleeding risk, while the the actual diagnosed bleeding shown at y-axis. The diagonal dotted line showed an ideal model for the perfect prediction ability, and the solid line (bias-corrected line) represents the reality performance of the nomogram. The closer fit to the diagonal dotted line, the better prediction ability of the nomogram.
Figure 4ROC curves of bleeding nomogram in the training cohort (A) and validation cohort (B). Notes The y-axis represents true positive rate and x-axis shows false positive rate. The area between dotted line and the curve is AUC, and the larger of AUC (closed to one), is the higher of model’s accuracy. Then, the accuracy of bleeding risk model shows great based on AUC.
Figure 5Decision curve analysis for the bleeding risk nomogram. The y-axis measures the net benefit. The blue line represents the bleeding risk nomogram. The thin solid line represents the assumption that all patients were bleeding during the course of ITP progression. The thick solid line (parallel to the x-axis) represents the assumption that no patients were bleeding. The net benefit was calculated by subtracting the proportion of all patients who are false positive from the proportion who are true positive, weighting by the relative harm of forgoing treatment compared with the negative consequences of an unnecessary treatment. In this study, 14% (the intersection of blue line and thin solid line) was false positive rate and 88% (the intersection of blue line and thick solid line) was false negative rate.