Literature DB >> 32946785

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma.

Andrew L Ji, Adam J Rubin, Kim Thrane, Sizun Jiang, David L Reynolds, Robin M Meyers, Margaret G Guo, Benson M George, Annelie Mollbrink, Joseph Bergenstråhle, Ludvig Larsson, Yunhao Bai, Bokai Zhu, Aparna Bhaduri, Jordan M Meyers, Xavier Rovira-Clavé, S Tyler Hollmig, Sumaira Z Aasi, Garry P Nolan, Joakim Lundeberg, Paul A Khavari.   

Abstract

Entities:  

Year:  2020        PMID: 32946785      PMCID: PMC7505493          DOI: 10.1016/j.cell.2020.08.043

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


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(Cell 182, 497–514.e1–e22; July 23, 2020) As a result of human error, the spatial feature plot labeled ITGB1 in Figure 6G was instead a duplicate of the ITGA3 data just below it. Additionally, in Figure S4C, the order of some of the bar labels on the plot were swapped, in particular, the order of Treg, CD4+ Naïve, NK, and CD8+ Naive. Both figures have been corrected online. We are confident that these inadvertent panel duplication and labeling errors did not have any effect on our analyses or on any conclusions drawn from the paper, and we apologize for the errors. Cellular Crosstalk Landscape Associated with Leading Edge Niches (corrected) Cellular Crosstalk Landscape Associated with Leading Edge Niches (original) T Cell Subset Characterization and Spatial Positioning (corrected) T Cell Subset Characterization and Spatial Positioning (original)
  24 in total

1.  Binary organization of epidermal basal domains highlights robustness to environmental exposure.

Authors:  Sangeeta Ghuwalewala; Seon A Lee; Kevin Jiang; Joydeep Baidya; Gopal Chovatiya; Pritinder Kaur; David Shalloway; Tudorita Tumbar
Journal:  EMBO J       Date:  2022-08-10       Impact factor: 14.012

2.  Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment.

Authors:  Dalia Barkley; Reuben Moncada; Maayan Pour; Deborah A Liberman; Ian Dryg; Gregor Werba; Wei Wang; Maayan Baron; Anjali Rao; Bo Xia; Gustavo S França; Alejandro Weil; Deborah F Delair; Cristina Hajdu; Amanda W Lund; Iman Osman; Itai Yanai
Journal:  Nat Genet       Date:  2022-08-05       Impact factor: 41.307

3.  Alignment and integration of spatial transcriptomics data.

Authors:  Ron Zeira; Max Land; Alexander Strzalkowski; Benjamin J Raphael
Journal:  Nat Methods       Date:  2022-05-16       Impact factor: 47.990

Review 4.  Intravital and high-content multiplex imaging of the immune system.

Authors:  Jyh Liang Hor; Ronald N Germain
Journal:  Trends Cell Biol       Date:  2021-12-14       Impact factor: 21.167

5.  SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor.

Authors:  Dario Righelli; Lukas M Weber; Helena L Crowell; Brenda Pardo; Leonardo Collado-Torres; Shila Ghazanfar; Aaron T L Lun; Stephanie C Hicks; Davide Risso
Journal:  Bioinformatics       Date:  2022-04-28       Impact factor: 6.931

6.  DestVI identifies continuums of cell types in spatial transcriptomics data.

Authors:  Romain Lopez; Baoguo Li; Hadas Keren-Shaul; Pierre Boyeau; Merav Kedmi; David Pilzer; Adam Jelinski; Ido Yofe; Eyal David; Allon Wagner; Can Ergen; Yoseph Addadi; Ofra Golani; Franca Ronchese; Michael I Jordan; Ido Amit; Nir Yosef
Journal:  Nat Biotechnol       Date:  2022-04-21       Impact factor: 68.164

Review 7.  Applicability of spatial transcriptional profiling to cancer research.

Authors:  Rania Bassiouni; Lee D Gibbs; David W Craig; John D Carpten; Troy A McEachron
Journal:  Mol Cell       Date:  2021-04-06       Impact factor: 17.970

Review 8.  Research Techniques Made Simple: Use of Imaging Mass Cytometry for Dermatological Research and Clinical Applications.

Authors:  Jesse Veenstra; Peter Dimitrion; Yi Yao; Li Zhou; David Ozog; Qing-Sheng Mi
Journal:  J Invest Dermatol       Date:  2021-04       Impact factor: 8.551

9.  Rapid Serial Immunoprofiling of the Tumor Immune Microenvironment by Fine Needle Sampling.

Authors:  Juhyun Oh; Jonathan C T Carlson; Christian Landeros; Hakho Lee; Scott Ferguson; William C Faquin; John R Clark; Mikael J Pittet; Sara I Pai; Ralph Weissleder
Journal:  Clin Cancer Res       Date:  2021-07-07       Impact factor: 12.531

10.  The landscape of driver mutations in cutaneous squamous cell carcinoma.

Authors:  Darwin Chang; A Hunter Shain
Journal:  NPJ Genom Med       Date:  2021-07-16       Impact factor: 8.617

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