Literature DB >> 32946781

Unraveling Hematopoiesis through the Lens of Genomics.

L Alexander Liggett1, Vijay G Sankaran2.   

Abstract

Hematopoiesis has long served as a paradigm of stem cell biology and tissue homeostasis. In the past decade, the genomics revolution has ushered in powerful new methods for investigating the hematopoietic system that have provided transformative insights into its biology. As part of the advances in genomics, increasingly accurate deep sequencing and novel methods of cell tracking have revealed hematopoiesis to be more of a continuous and less of a discrete and punctuated process than originally envisioned. In part, this continuous nature of hematopoiesis is made possible by the emergent outcomes of vast, interconnected regulatory networks that influence cell fates and lineage commitment. It is also becoming clear how these mechanisms are modulated by genetic variation present throughout the population. This review describes how these recently uncovered complexities are reshaping our concept of tissue development and homeostasis while opening up a more comprehensive future understanding of hematopoiesis.
Copyright © 2020 Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 32946781      PMCID: PMC7508400          DOI: 10.1016/j.cell.2020.08.030

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  191 in total

1.  THE DISTRIBUTION OF COLONY-FORMING CELLS AMONG SPLEEN COLONIES.

Authors:  L SIMINOVITCH; E A MCCULLOCH; J E TILL
Journal:  J Cell Comp Physiol       Date:  1963-12

2.  Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.

Authors:  Simon Haas; Jenny Hansson; Daniel Klimmeck; Dirk Loeffler; Lars Velten; Hannah Uckelmann; Stephan Wurzer; Áine M Prendergast; Alexandra Schnell; Klaus Hexel; Rachel Santarella-Mellwig; Sandra Blaszkiewicz; Andrea Kuck; Hartmut Geiger; Michael D Milsom; Lars M Steinmetz; Timm Schroeder; Andreas Trumpp; Jeroen Krijgsveld; Marieke A G Essers
Journal:  Cell Stem Cell       Date:  2015-08-20       Impact factor: 24.633

3.  Human fetal hemoglobin expression is regulated by the developmental stage-specific repressor BCL11A.

Authors:  Vijay G Sankaran; Tobias F Menne; Jian Xu; Thomas E Akie; Guillaume Lettre; Ben Van Handel; Hanna K A Mikkola; Joel N Hirschhorn; Alan B Cantor; Stuart H Orkin
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

4.  Targeted in situ genome-wide profiling with high efficiency for low cell numbers.

Authors:  Peter J Skene; Jorja G Henikoff; Steven Henikoff
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

5.  Identification of unipotent megakaryocyte progenitors in human hematopoiesis.

Authors:  Kohta Miyawaki; Hiromi Iwasaki; Takashi Jiromaru; Hirotake Kusumoto; Ayano Yurino; Takeshi Sugio; Yasufumi Uehara; Jun Odawara; Shinya Daitoku; Yuya Kunisaki; Yasuo Mori; Yojiro Arinobu; Hirofumi Tsuzuki; Yoshikane Kikushige; Tadafumi Iino; Koji Kato; Katsuto Takenaka; Toshihiro Miyamoto; Takahiro Maeda; Koichi Akashi
Journal:  Blood       Date:  2017-03-23       Impact factor: 22.113

6.  Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age.

Authors:  Wendy W Pang; Elizabeth A Price; Debashis Sahoo; Isabel Beerman; William J Maloney; Derrick J Rossi; Stanley L Schrier; Irving L Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

7.  Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

Authors:  Ho Sung Rhee; B Franklin Pugh
Journal:  Cell       Date:  2011-12-09       Impact factor: 41.582

8.  Cancer etiology. Variation in cancer risk among tissues can be explained by the number of stem cell divisions.

Authors:  Cristian Tomasetti; Bert Vogelstein
Journal:  Science       Date:  2015-01-02       Impact factor: 47.728

9.  Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.

Authors:  Jacob C Ulirsch; Satish K Nandakumar; Li Wang; Felix C Giani; Xiaolan Zhang; Peter Rogov; Alexandre Melnikov; Patrick McDonel; Ron Do; Tarjei S Mikkelsen; Vijay G Sankaran
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

10.  Decoding human fetal liver haematopoiesis.

Authors:  Dorin-Mirel Popescu; Rachel A Botting; Emily Stephenson; Kile Green; Simone Webb; Laura Jardine; Emily F Calderbank; Krzysztof Polanski; Issac Goh; Mirjana Efremova; Meghan Acres; Daniel Maunder; Peter Vegh; Yorick Gitton; Jong-Eun Park; Roser Vento-Tormo; Zhichao Miao; David Dixon; Rachel Rowell; David McDonald; James Fletcher; Elizabeth Poyner; Gary Reynolds; Michael Mather; Corina Moldovan; Lira Mamanova; Frankie Greig; Matthew D Young; Kerstin B Meyer; Steven Lisgo; Jaume Bacardit; Andrew Fuller; Ben Millar; Barbara Innes; Susan Lindsay; Michael J T Stubbington; Monika S Kowalczyk; Bo Li; Orr Ashenberg; Marcin Tabaka; Danielle Dionne; Timothy L Tickle; Michal Slyper; Orit Rozenblatt-Rosen; Andrew Filby; Peter Carey; Alexandra-Chloé Villani; Anindita Roy; Aviv Regev; Alain Chédotal; Irene Roberts; Berthold Göttgens; Sam Behjati; Elisa Laurenti; Sarah A Teichmann; Muzlifah Haniffa
Journal:  Nature       Date:  2019-10-09       Impact factor: 69.504

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  27 in total

1.  Variant to function mapping at single-cell resolution through network propagation.

Authors:  Fulong Yu; Liam D Cato; Chen Weng; L Alexander Liggett; Soyoung Jeon; Keren Xu; Charleston W K Chiang; Joseph L Wiemels; Jonathan S Weissman; Adam J de Smith; Vijay G Sankaran
Journal:  Nat Biotechnol       Date:  2022-06-06       Impact factor: 54.908

2.  Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.

Authors:  Linda Kachuri; Soyoung Jeon; Andrew T DeWan; Catherine Metayer; Xiaomei Ma; John S Witte; Charleston W K Chiang; Joseph L Wiemels; Adam J de Smith
Journal:  Am J Hum Genet       Date:  2021-08-31       Impact factor: 11.043

Review 3.  Clonal Hematopoiesis: Role in Hematologic and Non-Hematologic Malignancies.

Authors:  Ugo Testa; Germana Castelli; Elvira Pelosi
Journal:  Mediterr J Hematol Infect Dis       Date:  2022-09-01       Impact factor: 3.122

Review 4.  The long and winding road: homeostatic and disordered haematopoietic microenvironmental niches: a narrative review.

Authors:  Suzanne M Watt
Journal:  Biomater Transl       Date:  2022-03-28

5.  Clonal lineage tracing reveals shared origin of conventional and plasmacytoid dendritic cells.

Authors:  Jue Feng; Joseph N Pucella; Geunhyo Jang; Marcela Alcántara-Hernández; Samik Upadhaya; Nicholas M Adams; Alireza Khodadadi-Jamayran; Colleen M Lau; Marlon Stoeckius; Stephanie Hao; Peter Smibert; Aristotelis Tsirigos; Juliana Idoyaga; Boris Reizis
Journal:  Immunity       Date:  2022-02-17       Impact factor: 43.474

Review 6.  Deciphering transcriptional and functional heterogeneity in hematopoiesis with single-cell genomics.

Authors:  Jorge D Martin-Rufino; Vijay G Sankaran
Journal:  Curr Opin Hematol       Date:  2021-07-01       Impact factor: 3.218

7.  Single-Cell RNA Sequencing to Disentangle the Blood System.

Authors:  Jean Acosta; Daniel Ssozi; Peter van Galen
Journal:  Arterioscler Thromb Vasc Biol       Date:  2021-01-14       Impact factor: 8.311

8.  Familial thrombocytopenia due to a complex structural variant resulting in a WAC-ANKRD26 fusion transcript.

Authors:  Lara Wahlster; Jeffrey M Verboon; Leif S Ludwig; Susan C Black; Wendy Luo; Kopal Garg; Richard A Voit; Ryan L Collins; Kiran Garimella; Maura Costello; Katherine R Chao; Julia K Goodrich; Stephanie P DiTroia; Anne O'Donnell-Luria; Michael E Talkowski; Alan D Michelson; Alan B Cantor; Vijay G Sankaran
Journal:  J Exp Med       Date:  2021-06-07       Impact factor: 17.579

Review 9.  Analyzing signaling activity and function in hematopoietic cells.

Authors:  Tobias Kull; Timm Schroeder
Journal:  J Exp Med       Date:  2021-06-15       Impact factor: 14.307

Review 10.  Fate of Hematopoiesis During Aging. What Do We Really Know, and What are its Implications?

Authors:  Hal E Broxmeyer; Yan Liu; Reuben Kapur; Christie M Orschell; Arafat Aljoufi; James P Ropa; Thao Trinh; Sarah Burns; Maegan L Capitano
Journal:  Stem Cell Rev Rep       Date:  2020-11-03       Impact factor: 5.739

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