MRI data confirm the selective involvement of thalamic and amygdalar nuclei in amyotrophic lateral sclerosis and primary lateral sclerosis.

A standardised imaging protocol was implemented to evaluate disease burden in specific thalamic and amygdalar nuclei in 133 carefully phenotyped and genotyped motor neuron disease patients. "Switchboard malfunction in motor neuron diseases: selective pathology of thalamic nuclei in amyotrophic lateral sclerosis and primary lateral sclerosis" [1] "Amygdala pathology in amyotrophic lateral sclerosis and primary lateral sclerosis" [2] Raw volumetric data, group comparisons, effect sizes and percentage change are presented. Both ALS and PLS patients exhibited focal thalamus atrophy in ventral lateral and ventral anterior regions revealing extrapyramidal motor degeneration. Reduced accessory basal nucleus and cortical nucleus volumes were noted in the amygdala of C9orf72 negative ALS patients compared to healthy controls. ALS patients carrying the GGGGCC hexanucleotide repeats in C9orf72 exhibited preferential pathology in the mediodorsal-paratenial-reuniens thalamic nuclei and in the lateral nucleus and cortico-amygdaloid transition area of the amygdala. Considerable thalamic atrophy was observed in the sensory nuclei and lateral geniculate region of PLS patients. Our data demonstrate genotype-specific patterns of thalamus and amygdala involvement in ALS and a distinct disease-burden pattern in PLS. The dataset may be utilised for validation purposes, meta-analyses and the interpretation of thalamic and amygdalar profiles from other ALS genotypes.

Specifications Table

Value of the Data

The volumetric profile of thalamic and amygdalar nuclei in C9orf72 allows the comparative assessment of imaging findings in other ALS genotypes.

The presented dataset may aid the interpretation of MRI data from asymptomatic C9orf72 hexanucleotide carriers.

The data also permit meta-analyses across multiple data sources.

Reference thalamic and amygdala data form healthy controls may be utilised for the interpretation of imaging findings in other neurological conditions.

Data Description

In this dataset we present the volumetric profile of thalamic nuclei in 12 ALS patients carrying the GGGGCC hexanucleotide repeat expansion in C9orf72, 88 C9orf72 negative ALS patients, 33 PLS patients and 117 age and gender-matched healthy controls. The demographic, genetic and clinical characteristics of study participants are reported in the companion articles [1,2]. Table 1. Raw volumetric data are available online at Mendeley Data; http://dx.doi.org/10.17632/hchj4w6zck.2. and http://dx.doi.org/10.17632/28mhksbnsy.2. Raw volumetric profiles in each study group and statistically significant intergroup differences are also presented in Fig. 1, Fig. 2. Effect sizes for volumetric differences between the study groups are presented in Table 2. Percentage change in thalamic and amygdalar nuclei with respect of healthy controls is shown in Fig. 3., ranking the most affected regions in each patient cohort.

Table 1

Data categories and measures ALS = amyotrophic lateral sclerosis; ALSFRS-r = amyotrophic lateral sclerosis functional rating scale-revised; PLS = Primary lateral sclerosis; C9+ = C9orf72 hexanucleotide carrier, C9- = C9orf72 non-carrier, HC – Healthy Control, Rt-Right, Lt-Left.

Data categories	Specific Measures
Demographic variables	Age (years)
	Gender (Male/Female)
	Years of education (years)
	Handedness (Rt/Lt)
	Site of onset (Limb/Bulbar)
	Diagnosis (C9+ALS, C9-ALS, PLS, HC)
Thalamic nucleus volumes	Anteroventral (mm3)
	Lateral geniculate (mm3)
	Medial geniculate (mm3)
	Pulvinar/Limitans (mm3)
	Laterodorsal (mm3)
	Lateroposterior (mm3)
	Mediodorsal/Paratenial/Reuniens (mm3)
	Motor Hub (mm3)
	Sensory Hub (mm3)
	Intralaminar (mm3)
Amygdaloid nuclei volumes	Lateral nucleus (mm3)
	Basal nucleus (mm3)
	Accessory basal nucleus (mm3)
	Anterior amygdaloid area (mm3)
	Central nucleus (mm3)
	Medial nucleus (mm3)
	Cortical nucleus (mm3)
	Corticoamygdaloid transition (mm3)
	Paralaminar nucleus (mm3)
	Whole amygdala (mm3)
Effect sizes of intergroup differences Cohen's |d|	C9+ALS versus healthy controls
	C9-ALS versus healthy controls
	PLS versus healthy controls
	C9+ALS versus C9-ALS
	C9+ALS versus PLS
	C9-ALS versus PLS
Percentage change with respect to estimated marginal means of healthy controls	Anteroventral (mm3)
	Lateral geniculate (mm3)
	Medial geniculate (mm3)
	Pulvinar/Limitans (mm3)
	Laterodorsal (mm3)
	Lateroposterior (mm3)
	Mediodorsal/Paratenial/Reuniens (mm3)
	Motor Hub (mm3)
	Sensory Hub (mm3)
	Intralaminar (mm3)
	Lateral nucleus (mm3)
	Basal nucleus (mm3)
	Accessory basal nucleus (mm3)
	Anterior amygdaloid area (mm3)
	Central nucleus (mm3)
	Medial nucleus (mm3)
	Cortical nucleus (mm3)
	Corticoamygdaloid transition (mm3)
	Paralaminar nucleus (mm3)
	Whole amygdala (mm3)

Fig. 1

The volumetric profile of thalamic nuclei in C9orf72 hexanucleotide carrying ALS patients (ALS C9+), C9orf72 negative amyotrophic lateral sclerosis patients (ALS C9-), primary lateral sclerosis patients (PLS) and healthy controls (HC). Statistically significant intergroup differences following correction for age, gender, intracranial volumes and multiple comparisons are indicated with asterisks. * p < 0.05 ** p < 0.01.

Fig. 2

The raw volumetric profile of amygdalar nuclei in C9orf72 hexanucleotide carrying ALS patients (ALS-C9+), C9orf72 negative amyotrophic lateral sclerosis patients (ALS-C9-), primary lateral sclerosis patients (PLS) and healthy controls (HC). Statistically significant intergroup differences following corrections for age, gender, intracranial volumes and multiple comparisons are indicated with asterisks. * p < 0.05.

Table 2

Effect sizes for intergroup differences using Cohen's |d|. A ‘|d|’ value over 0.80 is considered a large effect size and is shown in red; 0.50–0.79 signifies a medium effect size and is highlighted in green, 0.20–0.49 is regarded as a small effect size and is shown in yellow, |d| < 0.19 is a negligible effect size and is presented in grey.

Image, table 2

Fig. 3

The segmental thalamus and amygdala profile of C9+ ALS, C9- ALS, and PLS with reference to healthy controls. 100% represents the estimated marginal mean of healthy controls for each structure. Estimated marginal means of volumes were calculated with the following values age = 59.07, gender = 1.43, Education = 13.68, total intracranial volume = 1,432,347.15.

Experimental Design, Materials, and Methods

The neuroimaging signature of ALS is associated with motor cortex [3], corticospinal tract [4], corpus callosum [5,6], brainstem [7], and spinal cord pathology [8]. Neuropsychological manifestations [9,10] and extra-motor pathology [11,12] have also been gradually characterised [11,12]. Thalamus pathology is increasingly recognised in ALS [13], [14], [15], [16], but limited information is available in PLS [14,17]. This neuroimaging study was approved by the relevant institutional ethic committee and all participants provided informed consent. Thirty-three patients with primary lateral sclerosis, 100 patients with amyotrophic lateral sclerosis and 117 healthy controls were included in this study. Patients with ALS were stratified for the presence of GGGGCC hexanucleotide expansion in C9orf72. All patients underwent standardised clinical assessment. [10] The study was specifically designed to characterise thalamus degeneration in ALS and PLS and identify distinguishing imaging characteristics between the two conditions. [17,18] Total intracranial volumes (TIV) were estimated using FSL-FIRST of the FMRIB's Software Library (FSL). The thalamus was segmented into 25 sub-regions using a Bayesian parcellation algorithm based on a probabilistic atlas [19].

The thalamic and amygdalar profiles of study groups were evaluated with respect to each nucleus. Statistically significant intergroup differences were identified following corrections for age, gender, education, TIV and multiple comparisons [20]. Fig. 1. In addition, Cohen's |d| was calculated to interpret intergroup differences in nuclear volumes. |d| ≥ 0.80 was considered a large effect size; 0.50–0.79 a medium effect size; and 0.20–0.49 regarded as a small effect size. Table 2. To evaluate which nuclei were most affected in the patient groups and rank their involvement, percentage change was calculated in each nucleus with reference to the estimated marginal means of healthy controls. Based on this analysis, the most significantly affected thalamic nuclei in the ALS C9+ cohort are the laterodorsal nuclei, followed by mediodorsal-paratenial-reuniens and anteroventral regions. In the ALS C9- cohort, the laterodorsal nuclei were also the most atrophic structure, followed by the anteroventral region. In the PLS cohort, the most significant volume reductions were observed in sensory nuclei and the lateral geniculate. Fig. 3. In the amygdala, the most significantly affected structures in the ALS C9+ cohort are the cortico-amygdaloid transition area, followed by accessory-basal nucleus and the lateral nucleus. In the ALS C9- cohort, the cortical nucleus was also the most atrophic structure, followed by the medial nucleus and the anterior amygdaloid nucleus. We found no evidence of amygdala atrophy in the PLS cohort, either by the assessment of the entire structure or the analysis of the specific nuclei.

Declaration of Competing Interest

None declared.

Subject	Neurology, Amyotrophic Lateral Sclerosis, Primary Lateral Sclerosis, Radiology, Neuroimaging
Specific subject area	MRI, Grey matter volumetry, Thalamus
Type of data	Magnetic resonance imaging: quantitative neuroimaging metrics data form a standardised acquisition protocol
How data were acquired	Imaging data were acquired on a Philips Achieva 3T MRI scanner (Philips Medical Systems, Best, The Netherlands) with an 8-channel head coil.
Data format	The volumetric profile of thalamic nuclei are presented as raw data, percentage change, and comparative p-values corrected for age, gender, education and total intracranial volumes
Parameters for data collection	3D T1-weighted sequence: spatial resolution: 1 × 1 × 1 mm, Field of view: 256 × 256 × 160 mm, repetition time=8.5 ms, Echo time = /3.9 ms, Inversion time =1060 ms, flip angle = 8°, SENSE factor = 1.5, sagittal acquisition; 256 slices.
Description of data collection	Data were collected on a 3 Tesla MRI system. Demographic variables were recorded before the MRI scan, and a standardised neurological examination was also performed on the day of the MRI.
Data source location	Institution: Computational neuroimaging group, Trinity Biomedical Sciences Institute, Trinity College DublinCity/Town/Region: DublinCountry: Ireland
Data accessibility	Raw volumetric data are available online at Mendeley Data; http://dx.doi.org/10.17632/hchj4w6zck.2
Related research article	Authors: Rangariroyashe H. Chipika, Eoin Finegan, Stacey Li Hi Shing, Mary Clare McKenna, Kai Ming Chang, Mark A. Doherty, Jennifer C. Hengeveld, Alice Vajda, Niall Pender, Siobhan Hutchinson, Colette Donaghy, Russell L. McLaughlin, Orla Hardiman, Peter BedeTitle: "Switchboard" malfunction in motor neuron diseases: Selective pathology of thalamic nuclei in amyotrophic lateral sclerosis and primary lateral sclerosisJournal: Neuroimage ClinicalDOI: Neuroimage Clin. 2020 May 30;27:102300. doi: 10.1016/j.nicl.2020.102300.Authors: Rangariroyashe H. Chipika, Foteini Christidi, Eoin Finegan, Stacey Li Hi Shing, Mary C. McKenna, Kai Ming Chang, Mark A. Doherty, Jennifer C. Hengeveld, Alice Vajda, Niall Pender, Siobhan Hutchinson, Colette Donaghy, Russell L. McLaughlin, Orla Hardiman, Peter BedeTitle: Amygdala pathology in amyotrophic lateral sclerosis and primary lateral sclerosisJournal: Journal of the neurological sciencesDOI: 10.1016/j.jns.2020.117039.