| Literature DB >> 32927650 |
Daniel Álvarez1, Elena López-Castro1, Arturo Guerrero1, Lucía Riera2, Julio Pérez2,3, Jesús Díaz4, M Isabel Menéndez1, Ramón López1.
Abstract
A comparative theoretical study on the reactivity of the complexes [ReY(CO)3(bipy)] (Y = NH2, NHMe, NHpTol, OH, OMe, OPh, PH2, PHMe, PMe2, PHPh, PPh2, PMePh, SH, SMe, SPh; bipy = 2,2'-bipyridine) towards methyl propiolate was carried out to analyze the influence of both the heteroatom (N, O, P, S) and the alkyl and/or aryl substituents of the Y ligand on the nature of the product obtained. The methyl substituent tends to accelerate the reactions. However, an aromatic ring bonded to N and O makes the reaction more difficult, whereas its linkage to P and S favour it. On the whole, ligands with O and S heteroatoms seem to disfavour these processes more than ligands with N and P heteroatoms, respectively. Phosphido and thiolato ligands tend to yield a coupling product with the bipy ligand, which is not the general case for hydroxo, alcoxo or amido ligands. When the Y ligand has an O/N and an H atom the most likely product is the one containing a coupling with the carbonyl ligand, which is not always obtained when Y contains P/S. Only for OMe and OPh, the product resulting from formal insertion into the Re-Y bond is the preferred.Entities:
Keywords: activated alkynes; computational chemistry; organometallic chemistry; reaction mechanisms; rhenium complexes
Year: 2020 PMID: 32927650 PMCID: PMC7571231 DOI: 10.3390/molecules25184134
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Types of products experimentally obtained in the reaction of [ReY(CO)3(N-N)] (Y = NHpTol, OH, OMe, PPh2; N-N = bipy and/or phen) with activated alkynes and herein denoted as A (P), B (P), and C (P).
Scheme 2Schematic structures of the species located on the type-I potential energy surfaces (PES) found for the reaction of the complexes [ReY(CO)3(bipy)] (Y = PR1R2 with R1 = R2 = H, Me, Ph) towards HMAD. The connectivities among these species are also shown with arrows. Acetylenic carbon atoms of HMAD are numbered both in the isolated reactant and in TS1. Analogous structures were found for the Re complex with Y = OH.
Scheme 3Schematic structures of the species located on the type-II PES found for the reaction of the complex [Re(OMe)(CO)3(bipy)] towards HMAD. The connectivities among these species are also shown with arrows. Acetylenic carbon atoms of HMAD are numbered both in the isolated reactant and in TS1.
Scheme 4Schematic structures of the species located on the type-III PES found for the reaction of the complex [Re(NHpTol)(CO)3(bipy)] towards HMAD. The connectivities among these species are also shown with arrows. Acetylenic carbon atoms of HMAD are numbered both in the isolated reactant and in TS1.
Figure 1B3LYP optimized structures of some species located for the reaction of the complex [Re(NHpTol)(CO)3(bipy)] towards HMAD. B3LYP optimized structures of I1′ and TS2 for Y = PPh2 are also given for comparison purposes.
Scheme 5Schematic structures of the species located on the type-IV PES found for the reaction of the complex [Re(OPh)(CO)3(bipy)] towards HMAD. The connectivities among these species are also shown with arrows. Acetylenic carbon atoms of HMAD are numbered both in the isolated reactant and in TS1.
Gibbs energy barriers, in kcal/mol, determined by the TS located along the reaction mechanisms found for the reaction between the complexes [ReY(CO)3(bipy)] (Y = NH2, NHMe, NHpTol, OH, OMe, OPh, PH2, PHMe, PMe2, PHPh, PPh2, PMePh, SH, SMe, SPh) and HMAD at the DLPNO-CCSD(T) level. 1,2 Gibbs energy, in kcal/mol, of the plausible products referred to that of the respective separate reactants at the same level of theory and type of PES found for each Y ligand are also given.
| Y | TS1 | TS1′ | TS1 | TS2 | TS2 | TS2 | P | P | P | PES |
|---|---|---|---|---|---|---|---|---|---|---|
| NH2 |
|
| 19.3 |
| 9.9 | 11.2 | −8.0 ( | −15.1 | −29.1 | III |
| NHMe | 17.2 | 4.3 |
| 0.7 |
| 9.2 | −12.4 (−32.3) |
| −31.2 | III |
| NH |
|
| 21.4 | 19.0 | 20.6 | −0.2 ( | −5.1 | −22.4 | III | |
| OH |
|
|
| 31.2 | 28.3 | 15.2 ( | 8.1 | −13.7 | I | |
| OMe |
|
| 29.5 |
|
| 4.9 |
| II | ||
| OPh |
| 38.8 |
| 24.2 | 16.2 |
| IV | |||
| PH2 |
|
| 13.5 |
| 34.2 | 0.1 (0.3) |
| −13.1 | I | |
| PHMe |
|
| 5.1 |
| 21.1 | −8.9 (−4.3) |
| −18.3 | I | |
| PMe2 |
|
| 5.6 |
| 20.3 | −17.3 |
| −24.1 | I | |
| PHPh |
|
| 8.2 |
| 17.5 | −7.4 (−4.2) |
| −17.5 | I | |
| PPh2 |
|
| 5.2 |
| 20.6 | −9.3 |
| −16.8 | I | |
| PMePh |
|
| 3.7 |
| 18.7 | −11.6 |
| −21.1 | I | |
| SH |
| 28.0 |
| 35.8 | 39.1 | 21.1 | 13.7 | −2.4 | III | |
| SMe | 23.1 | 26.1 |
| 24.7 |
| 32.1 | 11.0 |
| −9.1 | III |
| SPh | 30.8 |
| 29.0 |
| 34.8 | 14.4 |
| −5.7 | III |
1 All the Gibbs energy barriers are determined with respect to the sum of the Gibbs energies of the respective separate reactants or with respect to the Gibbs energy of the immediately preceding intermediate when this species is more stable than the corresponding separate reactants. 2 Bold data show the most preferred reaction route. 3 The product theoretically preferred is consistent with available experimental data (see Scheme 1).
Figure 2Energies (in eV) of the five highest occupied orbitals in the reactant complexes [ReY(CO)3(bipy)] (Y = NH2, NHMe, NHpTol, OH, OMe, OPh, PH2, PHMe, PMe2, PHPh, PPh2, PMePh, SH, SMe, SPh).
Figure 3Pictures of the computed HOMO of the reactant complexes [ReY(CO)3(bipy)] (Y = NH2, NHMe, NHpTol, OH, OMe, OPh, PH2, PMe2, PHPh, SH, SMe, SPh).
Bond distances between Re and the heteroatom of the Y ligand and between the heteroatom and the carbon of the alkyl or aryl substituent directly linked to it (d(Re-Y) and d(Y-CS) in Å, respectively), electron delocalization indexes at the bond critical points located between each of the two pairs of atoms mentioned above (DI(Re-Y) and DI(Y-CS), respectively), and net natural atomic charges of the nucleophilic atom of the Y ligand, the attacked carbon of the carbonyl ligand in cis disposition to the Y ligand, and the attacked non-substituted ortho carbon of the bipy ligand (NAC(Y), NAC(C), and NAC(C) in e, respectively) of the reactant complexes [ReY(CO)3(bipy)] (Y = NH2, NHMe, NHpTol, OH, OMe, OPh, PH2, PHMe, PMe2, PHPh, PPh2, PMePh, SH, SMe, SPh) at the B3LYP level.
| Y | d(Re-Y) | d(Y-CS) | DI(Re-Y) | DI(Y-CS) | NAC(Y) | NAC(C | NAC(C |
|---|---|---|---|---|---|---|---|
| NH2 | 2.174 | 0.6687 | −1.164 | 0.734 | 0.063 | ||
| NHMe | 2.156 | 1.461 | 0.6689 | 1.0399 | −0.799 | 0.733 | 0.066 |
| NH | 2.147 | 1.372 | 0.6218 | 1.1322 | −0.790 | 0.734 | 0.068 |
| OH | 2.115 | 0.6145 | −1.016 | 0.724 | 0.069 | ||
| OMe | 2.096 | 1.400 | 0.5998 | 0.9459 | −0.752 | 0.724 | 0.067 |
| OPh | 2.134 | 1.329 | 0.5231 | 0.9925 | −0.678 | 0.728 | 0.069 |
| PH2 | 2.586 | 0.6736 | −0.128 | 0.739 | 0.056 | ||
| PHMe | 2.582 | 1.882 | 0.6803 | 0.9166 | 0.180 | 0.737 | 0.059 |
| PMe2 | 2.602 | 1.876 | 0.6661 | 0.8962 | 0.462 | 0.734 | 0.058 |
| PHPh | 2.591 | 1.844 | 0.6525 | 0.9337 | 0.232 | 0.735 | 0.062 |
| PPh2 | 2.614 | 1.864 | 0.6352 | 0.8793 | 0.519 | 0.739 | 0.060 |
| PMePh | 2.615 | 1.847 | 0.6341 | 0.9256 | 0.510 | 0.735 | 0.058 |
| SH | 2.551 | 0.6541 | −0.482 | 0.747 | 0.068 | ||
| SMe | 2.535 | 1.841 | 0.6758 | 1.1198 | −0.188 | 0.745 | 0.066 |
| SPh | 2.545 | 1.782 | 0.6427 | 1.1956 | −0.085 | 0.740 | 0.068 |
Bond distances between Re and the heteroatom of the Y ligand (d(Re-Y) in Å), electron delocalization indexes at the bond critical points located between Re and Y (DI(Re-Y)), and net natural atomic charges of the nucleophilic atom of the Y ligand, the attacked carbon of the carbonyl ligand in cis disposition to the Y ligand, the attacked non-substituted ortho carbon of the bipy ligand, the non-substituted acetylenic carbon, and the substituted acetylenic carbon (NAC(Y), NAC(C), NAC(C), NAC(C1), and NAC(C2) in e, respectively) at the intermediate I1′ when Y = NH2, NHMe, NHpTol, OH, OMe, OPh, PH2, PHMe, PMe2, PHPh, PPh2, PMePh, SH, SMe, SPh) at the B3LYP level.
| Y | d(Re-Y) | DI(Re-Y) | NAC(Y) | NAC(C | NAC(C | NAC(C1) | NAC(C2) |
|---|---|---|---|---|---|---|---|
| NH2 | 2.271 | 0.4893 | −0.825 | 0.740 | 0.081 | −0.155 | −0.348 |
| NHMe | 2.292 | 0.4650 | −0.646 | 0.727 | 0.080 | −0.139 | −0.336 |
| NH | 2.314 | 0.4594 | −0.652 | 0.737 | 0.078 | −0.154 | −0.317 |
| OH | 2.253 | 0.3747 | −0.706 | 0.730 | 0.082 | −0.004 | −0.392 |
| OMe 1 | 2.256 | 0.3930 | −0.568 | 0.725 | 0.089 | −0.047 | −0.388 |
| OPh 1 | 2.316 | 0.3269 | −0.544 | 0.726 | 0.087 | 0.003 | −0.370 |
| PH2 | 2.514 | 0.6458 | 0.686 | 0.762 | 0.079 | −0.671 | −0.298 |
| PHMe | 2.518 | 0.6496 | 0.956 | 0.763 | 0.081 | −0.681 | −0.295 |
| PMe2 | 2.534 | 0.6412 | 1.199 | 0.761 | 0.080 | −0.679 | −0.290 |
| PHPh | 2.525 | 0.6389 | 0.970 | 0.762 | 0.081 | −0.669 | −0.290 |
| PPh2 | 2.561 | 0.6135 | 1.225 | 0.756 | 0.078 | −0.671 | −0.293 |
| PMePh | 2.544 | 0.6295 | 1.215 | 0.756 | 0.080 | −0.672 | −0.288 |
| SH 1 | 2.572 | 0.5528 | 0.199 | 0.756 | 0.083 | −0.456 | −0.333 |
| SMe | 2.565 | 0.5593 | 0.444 | 0.756 | 0.084 | −0.479 | −0.319 |
| SPh 1 | 2.582 | 0.5372 | 0.470 | 0.750 | 0.085 | −0.464 | −0.311 |
1 For the sake of some degree of comparison, the non-appearance of I1′ led us to analyze I1 instead.