Literature DB >> 32921055

Orientation and Conformation of Proteins at the Air-Water Interface Determined from Integrative Molecular Dynamics Simulations and Sum Frequency Generation Spectroscopy.

Sarah Alamdari1, Steven J Roeters2, Thaddeus W Golbek2, Lars Schmüser2, Tobias Weidner2, Jim Pfaendtner1.   

Abstract

Understanding the assembly of proteins at the air-water interface (AWI) informs the formation of protein films, emulsion properties, and protein aggregation. Determination of protein conformation and orientation at an interface is difficult to resolve with a single experimental or simulation technique alone. To date, the interfacial structure of even one of the most widely studied proteins, lysozyme, at the AWI remains unresolved. In this study, molecular dynamics (MD) simulations are used to determine if the protein adopts a side-on, head-on, or axial orientation at the AWI with two different forcefields, GROMOS-53a6 + SPC/E and a99SB-disp + TIP4P-D. Vibrational sum frequency generation (SFG) spectroscopy experiments and spectral SFG calculations validate consistency between the structure determined from MD and experiments. Overall, we show with strong agreement that lysozyme adopts an axial conformation at pH 7. Further, we provide molecular-level insight as to how pH influences the binding domains of lysozyme resulting in side-on adsorption near the isoelectric point of the lysozyme.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32921055     DOI: 10.1021/acs.langmuir.0c01881

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  3 in total

1.  Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.

Authors:  Tobias Weidner; David G Castner
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2021-07-27       Impact factor: 12.400

2.  Structure and Orientation of the SARS-Coronavirus-2 Spike Protein at Air-Water Interfaces.

Authors:  Mikkel Bregnhøj; Steven J Roeters; Adam S Chatterley; Fani Madzharova; Rolf Mertig; Jan Skov Pedersen; Tobias Weidner
Journal:  J Phys Chem B       Date:  2022-04-28       Impact factor: 3.466

Review 3.  Polarization-Dependent Heterodyne-Detected Sum-Frequency Generation Spectroscopy as a Tool to Explore Surface Molecular Orientation and Ångström-Scale Depth Profiling.

Authors:  Chun-Chieh Yu; Takakazu Seki; Kuo-Yang Chiang; Fujie Tang; Shumei Sun; Mischa Bonn; Yuki Nagata
Journal:  J Phys Chem B       Date:  2022-07-18       Impact factor: 3.466

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.