| Literature DB >> 32919527 |
Nicholas C Turner1, Belinda Kingston2, Lucy S Kilburn3, Sarah Kernaghan3, Andrew M Wardley4, Iain R Macpherson5, Richard D Baird6, Rebecca Roylance7, Peter Stephens8, Olga Oikonomidou9, Jeremy P Braybrooke10, Mark Tuthill11, Jacinta Abraham12, Matthew C Winter13, Hannah Bye14, Michael Hubank15, Heidrun Gevensleben16, Ros Cutts2, Claire Snowdon3, Daniel Rea17, David Cameron9, Abeer Shaaban17, Katrina Randle18, Sue Martin3, Katie Wilkinson3, Laura Moretti3, Judith M Bliss3, Alistair Ring19.
Abstract
BACKGROUND: Circulating tumour DNA (ctDNA) testing might provide a current assessment of the genomic profile of advanced cancer, without the need to repeat tumour biopsy. We aimed to assess the accuracy of ctDNA testing in advanced breast cancer and the ability of ctDNA testing to select patients for mutation-directed therapy.Entities:
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Year: 2020 PMID: 32919527 PMCID: PMC7599319 DOI: 10.1016/S1470-2045(20)30444-7
Source DB: PubMed Journal: Lancet Oncol ISSN: 1470-2045 Impact factor: 41.316
Figure 1Trial profile
Further detail on accuracy of ctDNA testing is provided in the appendix (p 17). ctDNA=circulating tumour DNA. *436 additional samples were analysed by targeted sequencing retrospectively; these were not used for determining cohort suitability; agreement between digital PCR and targeted sequencing (n=800) was as follows: AKT1 kappa 0·93 (95% CI 0·87–0·99), HER2 kappa 0.89 (0·79–0·98), ESR1 kappa 0·90 (0·86–0·93), and PIK3CA kappa 0·92 (0·89–0·95).
Baseline characteristics
| Entered cohort A (n=84) | Did not enter cohort A (n=138) | Entered cohort B (n=21) | Did not enter cohort B (n=15) | Entered cohort C (n=18) | Did not enter cohort C (n=12) | Entered cohort D (n=19) | Did not enter cohort D (n=18) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Age group at registration (years) | |||||||||||
| <50 | 285 (27·1%) | 18 (21·4%) | 32 (23·2%) | 2 (9·5%) | 2 (13·3%) | 3 (16·7%) | 2 (16·7%) | 7 (36·8%) | 3 (16·7%) | ||
| 50–59 | 348 (33·1%) | 36 (42·9%) | 48 (34·8%) | 9 (42·9%) | 3 (20·0%) | 7 (38·9%) | 3 (25·0%) | 7 (36·8%) | 11 (61·1%) | ||
| 60–69 | 265 (25·2%) | 20 (23·8%) | 36 (26·1%) | 6 (28·6%) | 8 (53·3%) | 6 (33·3%) | 4 (33·3%) | 4 (21·1%) | 3 (16·7%) | ||
| ≥70 | 153 (14·6%) | 10 (11·9%) | 22 (15·9%) | 4 (19·0%) | 2 (13·3%) | 2 (11·1%) | 3 (25·0%) | 1 (5·3%) | 1 (5·6%) | ||
| Metastatic disease present at diagnosis | 146 (13·9%) | 18 (21·4%) | 20 (14·5%) | 2 (9·5%) | 2 (13·3%) | 5 (27·8%) | 2 (16·7%) | 3 (15·8%) | 2 (11·1%) | ||
| Histological type at tumour diagnosis | |||||||||||
| Ductal | 777 (73·9%) | 63 (75·0%) | 103 (74·6%) | 9 (42·9%) | 6 (40·0%) | 13 (72·2%) | 9 (75·0%) | 14 (73·7%) | 11 (61·1%) | ||
| Lobular | 98 (9·3%) | 9 (10·7%) | 12 (8·7%) | 8 (38·1%) | 3 (20·0%) | 3 (16·7%) | 1 (8·3%) | 2 (10·5%) | 4 (22·2%) | ||
| Mixed ductal and lobular | 38 (3·6%) | 5 (6·0%) | 5 (3·6%) | 1 (4·8%) | 2 (13·3%) | 1 (5·6%) | 1 (8·3%) | 2 (10·5%) | 0 | ||
| Mixed ductal and mucinous | 3 (0·3%) | 1 (1·2%) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (5·6%) | ||
| Other invasive | 13 (1·2%) | 0 | 2 (1·4%) | 0 | 1 (6·7%) | 0 | 0 | 0 | 1 (5·6%) | ||
| Ductal carcinoma in situ | 2 | 1 (1·2%) | 1 (0·7%) | 0 | 0 | 0 | 0 | 0 | 0 | ||
| Not known or missing | 120 (11·4%) | 5 (6·0%) | 15 (10·9%) | 3 (14·3%) | 3 (20·0%) | 1 (5·6%) | 1 (8·3%) | 1 (5·3%) | 1 (5·6%) | ||
| Tumour grade | |||||||||||
| 1 | 48 (4·6%) | 7 (8·3%) | 10 (7·2%) | 2 (9·5%) | 1 (6·7%) | 1 (5·6%) | 1 (8·3%) | 0 | 0 | ||
| 2 | 402 (38·2%) | 37 (44·0%) | 70 (50·7%) | 11 (52·4%) | 6 (40·0%) | 11 (61·1%) | 8 (66·7%) | 11 (57·9%) | 6 (33·3%) | ||
| 3 | 445 (42·3%) | 28 (33·3%) | 44 (31·9%) | 4 (19·0%) | 5 (33·3%) | 5 (27·8%) | 1 (8·3%) | 6 (31·6%) | 12 (66·7%) | ||
| Not known or missing | 156 (14·8%) | 12 (14·3%) | 14 (10·1%) | 4 (19·0%) | 3 (20·0%) | 1 (5·6%) | 2 (16·7%) | 2 (10·5%) | 0 | ||
| Molecular subtype | |||||||||||
| HR positive, HER2 negative | 676 (64·3%) | 80 (95·2%) | 125 (90·6%) | 17 (81·0%) | 9 (60·0%) | 16 (88·9%) | 9 (75·0%) | 13 (68·4%) | 10 (55·6%) | ||
| HR positive, HER2 positive | 65 (6·2%) | 3 (3·6%) | 0 | 1 (4·8%) | 1 (6·7%) | 1 (5·6%) | 0 | 0 | 0 | ||
| HR negative, HER2 positive | 36 (3·4%) | 0 | 0 | 2 (9·5%) | 2 (13·3%) | 0 | 0 | 0 | 1 (5·6%) | ||
| Triple-negative breast cancer | 179 (17·0%) | 0 | 1 (0·7%) | 1 (4·8%) | 1 (6·7%) | 0 | 0 | 6 (31·6%) | 5 (27·8%) | ||
| HR positive, HER2 unknown | 39 (3·7%) | 1 (1·2%) | 7 (5·1%) | 0 | 1 (6·7%) | 1 (5·6%) | 3 (25·0%) | 0 | 1 (5·6%) | ||
| Other | 14 (1·3%) | 0 | 1 (0·7%) | 0 | 1 (6·7%) | 0 | 0 | 0 | 1 (5·6%) | ||
| Not known or missing | 42 (4·0%) | 0 | 4 (2·9%) | 0 | 0 | 0 | 0 | 0 | 0 | ||
| Disease sites at diagnosis | |||||||||||
| Visceral | 824 (78·4%) | 78 (92·9%) | 114 (82·6%) | 18 (85·7%) | 12 (80·0%) | 17 (94·4%) | 10 (83·3%) | 14 (73·7%) | 11 (61·1%) | ||
| Soft tissue or nodal | 668 (63·6%) | 56 (66·7%) | 66 (47·8%) | 12 (57·1%) | 11 (73·3%) | 11 (61·1%) | 5 (41·7%) | 15 (78·9%) | 15 (83·3%) | ||
| Bone | 638 (60·7%) | 76 (90·5%) | 107 (77·5%) | 16 (76·2%) | 9 (60·0%) | 18 (100·0%) | 11 (91·7%) | 12 (63·2%) | 12 (66·7%) | ||
| Treatment received for locally advanced or metastatic disease before study registration | |||||||||||
| Chemotherapy | 728 (69·3%) | 55 (65·5%) | 88 (63·8%) | 18 (85·7%) | 10 (66·7%) | 15 (83·3%) | 8 (66·7%) | 12 (63·2%) | 9 (50·0%) | ||
| 1 line | 345 (32·8%) | 26 (31·0%) | 38 (27·5%) | 7 (33·3%) | 4 (26·7%) | 8 (44·4%) | 5 (41·7%) | 7 (36·8%) | 4 (22·2%) | ||
| 2 lines | 201 (19·1%) | 13 (15·5%) | 27 (19·6%) | 9 (42·9%) | 3 (20·0%) | 3 (16·7%) | 3 (25·0%) | 4 (21·1%) | 3 (16·7%) | ||
| >2 lines | 181 (17·2%) | 16 (19·0%) | 22 (15·9%) | 2 (9·5%) | 3 (20·0%) | 4 (22·2%) | 0 | 1 (5·3%) | 2 (11·1%) | ||
| Unknown | 1 (0·1%) | 0 | 1 (0·7%) | 0 | 0 | 0 | 0 | 0 | 0 | ||
| Endocrine therapy | 685 (65·2%) | 79 (94·0%) | 127 (92·0%) | 14 (66·7%) | 11 (73·3%) | 18 (100·0%) | 12 (100·0%) | 11 (84·6%) | 7 (63·6%) | ||
| 1 line | 323 (30·7%) | 34 (40·5%) | 45 (32·6%) | 3 (14·3%) | 3 (20·0%) | 9 (50·0%) | 8 (66·7%) | 8 (61·5%) | 3 (27·3%) | ||
| 2 lines | 230 (21·9%) | 36 (42·9%) | 49 (35·5%) | 6 (28·6%) | 5 (33·3%) | 6 (33·3%) | 1 (8·3%) | 3 (23·1%) | 4 (36·4%) | ||
| 3 lines | 117 (11·1%) | 8 (9·5%) | 30 (21·7%) | 5 (23·8%) | 2 (13·3%) | 3 (16·7%) | 3 (25·0%) | 0 | 0 | ||
| >3 lines | 15 (1·4%) | 1 (1·2%) | 3 (2·2%) | 0 | 1 (6·7%) | 0 | 0 | 0 | 0 | ||
| Total lines of systemic therapy | |||||||||||
| 0 | 93 (8·9%) | 2 (2·4%) | 6 (4·3%) | 0 | 1 (6·7%) | 0 | 0 | 3 (15·8%) | 6 (33·3%) | ||
| 1 | 275 (26·2%) | 15 (17·9%) | 25 (18·1%) | 3 (14·3%) | 3 (20·0%) | 1 (5·6%) | 3 (25·0%) | 5 (26·3%) | 3 (16·7%) | ||
| 2 | 243 (23·1%) | 23 (27·4%) | 30 (21·7%) | 4 (19·0%) | 3 (20·0%) | 6 (33·3%) | 2 (16·7%) | 5 (26·3%) | 5 (27·8%) | ||
| 3 | 178 (16·9%) | 16 (19·0%) | 28 (20·3%) | 8 (38·1%) | 4 (26·7%) | 5 (27·8%) | 5 (41·7%) | 4 (21·1%) | 2 (11·1%) | ||
| 4 | 109 (10·4%) | 12 (14·3%) | 18 (13·0%) | 4 (19·0%) | 2 (13·3%) | 3 (16·7%) | 2 (16·7%) | 2 (10·5%) | 0 | ||
| 5 | 88 (8·4%) | 11 (13·1%) | 19 (13·8%) | 2 (9·5%) | 0 | 0 | 0 | 0 | 2 (11·1%) | ||
| >5 | 65 (6·2%) | 5 (6·0%) | 12 (8·7%) | 0 | 2 (13·3%) | 3 (16·7%) | 0 | 0 | 0 | ||
| Other systemic therapy | 421 (40·1%) | 41 (48·8%) | 59 (42·8%) | 11 (52·4%) | 8 (53·3%) | 9 (50·0%) | 4 (33·3%) | 11 (57·9%) | 7 (38·9%) | ||
| Anti-HER2 therapy | 89 (8·5%) | 3 (3·6%) | 1 (0·7%) | 3 (14·3%) | 3 (20·0%) | 1 (5·6%) | 0 | 0 | 0 | ||
| mTOR inhibitor (everolimus or vistusertib) | 116 (11·0%) | 18 (21·4%) | 31 (22·5%) | 5 (23·8%) | 2 (13·3%) | 3 (16·7%) | 1 (8·3%) | 3 (15·8%) | 2 (11·1%) | ||
| CDK4/6 inhibitor (palbociclib, ribociclib, or abemaciclib) | 89 (8·5%) | 8 (9·5%) | 14 (10·1%) | 1 (4·8%) | 1 (6·7%) | 6 (33·3%) | 0 | 4 (21·1%) | 1 (5·6%) | ||
| Immunotherapy (atezolizumab or pembrolizumab) | 20 (1·9%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||
| Other | 45 (4·3%) | 1 | 6 (4·3%) | 1 | 2 (13·3%) | 0 | 3 (25·0%) | 2 | 1 (5·6%) | ||
Data are n (%). HR=hormone receptor (oestrogen or progesterone receptor).
Two patients originally had ductal carcinoma in situ only as their primary diagnosis, but relapsed with invasive advanced cancer.
Determined at local hospitals from recurrence biopsy (or primary biopsy if recurrence biopsy unavailable).
Other molecular subtypes were: four HR negative, HER2 unknown; nine HR unknown, HER2 negative; one HR unknown, HER2 positive.
Study was amended after 515 patients had been recruited to require a maximum of two previous lines of chemotherapy.
For patients with oestrogen receptor-negative breast cancer and AKT1 mutation or PTEN mutation the denominator is patients with HR-positive disease only (for those who entered cohort D n=13; for those that did not enter cohort D n=11).
Patients may be included in more than one type of systemic therapy, but patients are only included once in each category (eg, if a patient had trastuzumab and pertuzumab they are counted once in the anti-HER2 therapy category).
Taselisib.
Capivasertib.
Lucitanib (n=1) and olaparib (n=1).
Figure 2Extended-dose fulvestrant in ESR1-mutant breast cancer (cohort A)
Waterfall plot of maximum change in tumour size in individual patients with ESR1 mutations in ctDNA treated with extended-dose fulvestrant. ctDNA=circulating tumour DNA.
Figure 3Neratinib in HER2-mutant breast cancer (cohort B)
Waterfall plot of maximum change in tumour size in individual patients with HER2 mutations in ctDNA treated with neratinib alone or neratinib plus fulvestrant. HR=hormone receptor. ctDNA=circulating tumour DNA.
Figure 4Capivasertib in AKT1-mutant and PTEN-mutant breast cancer (cohorts C and D)
(A) Waterfall plot of maximum change in tumour size in individual patients with HR-positive cancer and AKT1 mutations in ctDNA, treated with capivasertib plus fulvestrant (cohort C). (B) Waterfall plot of maximum change in tumour size in individual patients with AKT1 mutations and HR-negative breast cancer, or with activating PTEN mutations, treated with capivasertib (cohort D). ctDNA=circulating tumour DNA. HR=hormone receptor. PTEN truncating=PTEN truncating nonsense or frameshift mutation. PTEN deletion=PTEN homozygous deletion.