Literature DB >> 32895525

A comprehensive guide to studying inflammasome activation and cell death.

Rebecca E Tweedell1, R K Subbarao Malireddi1, Thirumala-Devi Kanneganti2.   

Abstract

Inflammasomes are multimeric heterogeneous mega-Dalton protein complexes that play key roles in the host innate immune response to infection and sterile insults. Assembly of the inflammasome complex following infection or injury begins with the oligomerization of the upstream inflammasome-forming sensor and proceeds through a multistep process of well-coordinated events and downstream effector functions. Together, these steps enable elegant experimental readouts with which to reliably assess the successful activation of the inflammasome complex and cell death. Here, we describe a comprehensive protocol that details several in vitro (in bone marrow-derived macrophages) and in vivo (in mice) strategies for activating the inflammasome and explain how to subsequently assess multiple downstream effects in parallel to unequivocally establish the activation status of the inflammasome and cell death pathways. Our workflow assesses inflammasome activation via the formation of the apoptosis-associated speck-like protein containing a CARD (ASC) speck; cleavage of caspase-1 and gasdermin D; release of IL-1β, IL-18, caspase-1, and lactate dehydrogenase from the cell; and real-time analysis of cell death by imaging. Analyses take up to ~24 h to complete. Overall, our multifaceted approach provides a comprehensive and consistent protocol for assessing inflammasome activation and cell death.

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Year:  2020        PMID: 32895525      PMCID: PMC7716618          DOI: 10.1038/s41596-020-0374-9

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  116 in total

Review 1.  Intracellular NOD-like receptors in host defense and disease.

Authors:  Thirumala-Devi Kanneganti; Mohamed Lamkanfi; Gabriel Núñez
Journal:  Immunity       Date:  2007-10       Impact factor: 31.745

Review 2.  Converging roles of caspases in inflammasome activation, cell death and innate immunity.

Authors:  Si Ming Man; Thirumala-Devi Kanneganti
Journal:  Nat Rev Immunol       Date:  2015-12-14       Impact factor: 53.106

Review 3.  Homeostasis-altering molecular processes as mechanisms of inflammasome activation.

Authors:  Adrian Liston; Seth L Masters
Journal:  Nat Rev Immunol       Date:  2017-02-06       Impact factor: 53.106

Review 4.  Mechanisms governing inflammasome activation, assembly and pyroptosis induction.

Authors:  Sannula Kesavardhana; Thirumala-Devi Kanneganti
Journal:  Int Immunol       Date:  2017-05-01       Impact factor: 4.823

5.  Mutation of a new gene encoding a putative pyrin-like protein causes familial cold autoinflammatory syndrome and Muckle-Wells syndrome.

Authors:  H M Hoffman; J L Mueller; D H Broide; A A Wanderer; R D Kolodner
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

Review 6.  Inflammasomes in the pathophysiology of autoinflammatory syndromes.

Authors:  Sarang Tartey; Thirumala-Devi Kanneganti
Journal:  J Leukoc Biol       Date:  2019-10-14       Impact factor: 4.962

Review 7.  Molecular mechanisms and functions of pyroptosis, inflammatory caspases and inflammasomes in infectious diseases.

Authors:  Si Ming Man; Rajendra Karki; Thirumala-Devi Kanneganti
Journal:  Immunol Rev       Date:  2017-05       Impact factor: 12.988

8.  Inflammasome-mediated disease animal models reveal roles for innate but not adaptive immunity.

Authors:  Susannah D Brydges; James L Mueller; Matthew D McGeough; Carla A Pena; Amirhossein Misaghi; Chhavi Gandhi; Chris D Putnam; David L Boyle; Gary S Firestein; Anthony A Horner; Pejman Soroosh; Wendy T Watford; John J O'Shea; Daniel L Kastner; Hal M Hoffman
Journal:  Immunity       Date:  2009-06-04       Impact factor: 31.745

9.  Divergence of IL-1, IL-18, and cell death in NLRP3 inflammasomopathies.

Authors:  Susannah D Brydges; Lori Broderick; Matthew D McGeough; Carla A Pena; James L Mueller; Hal M Hoffman
Journal:  J Clin Invest       Date:  2013-11       Impact factor: 14.808

10.  The inflammasome: a molecular platform triggering activation of inflammatory caspases and processing of proIL-beta.

Authors:  Fabio Martinon; Kimberly Burns; Jürg Tschopp
Journal:  Mol Cell       Date:  2002-08       Impact factor: 17.970

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  10 in total

1.  RIPK1 Distinctly Regulates Yersinia-Induced Inflammatory Cell Death, PANoptosis.

Authors:  R K Subbarao Malireddi; Sannula Kesavardhana; Rajendra Karki; Balabhaskararao Kancharana; Amanda R Burton; Thirumala-Devi Kanneganti
Journal:  Immunohorizons       Date:  2020-12-11

2.  Reconstitution System of NLRP3 Inflammasome in HEK293T Cells.

Authors:  Sheng Chen; Zhexu Chi; Di Wang
Journal:  Methods Mol Biol       Date:  2022

3.  ER-mitochondria communication is involved in NLRP3 inflammasome activation under stress conditions in the innate immune system.

Authors:  Ana Catarina Pereira; Jessica De Pascale; Rosa Resende; Susana Cardoso; Isabel Ferreira; Bruno Miguel Neves; Mylène A Carrascal; Mónica Zuzarte; Nuno Madeira; Sofia Morais; António Macedo; Anália do Carmo; Paula I Moreira; Maria Teresa Cruz; Cláudia F Pereira
Journal:  Cell Mol Life Sci       Date:  2022-03-28       Impact factor: 9.261

4.  AIM2 forms a complex with pyrin and ZBP1 to drive PANoptosis and host defence.

Authors:  SangJoon Lee; Rajendra Karki; Yaqiu Wang; Lam Nhat Nguyen; Ravi C Kalathur; Thirumala-Devi Kanneganti
Journal:  Nature       Date:  2021-09-01       Impact factor: 69.504

5.  Erianin: A Direct NLRP3 Inhibitor With Remarkable Anti-Inflammatory Activity.

Authors:  Xinyong Zhang; Lei Hu; Shilei Xu; Chao Ye; Aidong Chen
Journal:  Front Immunol       Date:  2021-10-20       Impact factor: 7.561

6.  TAT-RHIM: a more complex issue than expected.

Authors:  Benedikt Kolbrink; Theresa Riebeling; Nikolas K Teiwes; Claudia Steinem; Hubert Kalbacher; Ulrich Kunzendorf; Stefan Krautwald
Journal:  Biochem J       Date:  2022-02-11       Impact factor: 3.857

7.  A Probe into the Intervention Mechanism of Yiqi Huayu Jiedu Decoction on TLR4/NLRP3 Signal Pathway in Lipopolysaccharide-Induced Acute Respiratory Distress Syndrome (ARDS) Rats.

Authors:  Yuanhong Ma; Yifan Chen; Yan Li; Yan Liu; Yurong Kong; Qiao Zou; Zhengguang Guo; Xin Li; Yan Chu; Qian Wang
Journal:  Evid Based Complement Alternat Med       Date:  2022-02-18       Impact factor: 2.629

8.  Integrated stress response restricts macrophage necroptosis.

Authors:  David E Place; Parimal Samir; Rk Subbarao Malireddi; Thirumala-Devi Kanneganti
Journal:  Life Sci Alliance       Date:  2021-11-11

Review 9.  Role of pyroptosis in inflammation and cancer.

Authors:  Xiang Wei; Feng Xie; Xiaoxue Zhou; Yuchen Wu; Haiyan Yan; Ting Liu; Jun Huang; Fangwei Wang; Fangfang Zhou; Long Zhang
Journal:  Cell Mol Immunol       Date:  2022-08-15       Impact factor: 22.096

10.  Inflammatory Cell Death, PANoptosis, Mediated by Cytokines in Diverse Cancer Lineages Inhibits Tumor Growth.

Authors:  R K Subbarao Malireddi; Rajendra Karki; Balamurugan Sundaram; Balabhaskararao Kancharana; SangJoon Lee; Parimal Samir; Thirumala-Devi Kanneganti
Journal:  Immunohorizons       Date:  2021-07-21
  10 in total

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