Literature DB >> 32886100

Genetically encoded live-cell sensor for tyrosinated microtubules.

Shubham Kesarwani1,2, Prakash Lama1,2, Anchal Chandra3, P Purushotam Reddy3, A S Jijumon4,5, Satish Bodakuntla4,5, Balaji M Rao6, Carsten Janke4,5, Ranabir Das3, Minhajuddin Sirajuddin1.   

Abstract

Microtubule cytoskeleton exists in various biochemical forms in different cells due to tubulin posttranslational modifications (PTMs). Tubulin PTMs are known to affect microtubule stability, dynamics, and interaction with MAPs and motors in a specific manner, widely known as tubulin code hypothesis. At present, there exists no tool that can specifically mark tubulin PTMs in living cells, thus severely limiting our understanding of their dynamics and cellular functions. Using a yeast display library, we identified a binder against terminal tyrosine of α-tubulin, a unique PTM site. Extensive characterization validates the robustness and nonperturbing nature of our binder as tyrosination sensor, a live-cell tubulin nanobody specific towards tyrosinated microtubules. Using this sensor, we followed nocodazole-, colchicine-, and vincristine-induced depolymerization events of tyrosinated microtubules in real time and found each distinctly perturbs the microtubule polymer. Together, our work describes a novel tyrosination sensor and its potential applications to study the dynamics of microtubule and their PTM processes in living cells.
© 2020 Kesarwani et al.

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Year:  2020        PMID: 32886100      PMCID: PMC7659708          DOI: 10.1083/jcb.201912107

Source DB:  PubMed          Journal:  J Cell Biol        ISSN: 0021-9525            Impact factor:   10.539


  83 in total

1.  Key interaction modes of dynamic +TIP networks.

Authors:  Srinivas Honnappa; Oksana Okhrimenko; Rolf Jaussi; Hatim Jawhari; Ilian Jelesarov; Fritz K Winkler; Michel O Steinmetz
Journal:  Mol Cell       Date:  2006-09-01       Impact factor: 17.970

2.  Highly stable binding proteins derived from the hyperthermophilic Sso7d scaffold.

Authors:  Nimish Gera; Mahmud Hussain; Robert C Wright; Balaji M Rao
Journal:  J Mol Biol       Date:  2011-04-16       Impact factor: 5.469

3.  Fluorogenic probes for live-cell imaging of the cytoskeleton.

Authors:  Gražvydas Lukinavičius; Luc Reymond; Elisa D'Este; Anastasiya Masharina; Fabian Göttfert; Haisen Ta; Angelika Güther; Mathias Fournier; Stefano Rizzo; Herbert Waldmann; Claudia Blaukopf; Christoph Sommer; Daniel W Gerlich; Hans-Dieter Arndt; Stefan W Hell; Kai Johnsson
Journal:  Nat Methods       Date:  2014-05-25       Impact factor: 28.547

4.  Tubulin polyglutamylation is a general traffic-control mechanism in hippocampal neurons.

Authors:  Satish Bodakuntla; Anne Schnitzler; Cristopher Villablanca; Christian Gonzalez-Billault; Ivan Bieche; Carsten Janke; Maria M Magiera
Journal:  J Cell Sci       Date:  2020-02-13       Impact factor: 5.285

5.  Distinct populations of microtubules: tyrosinated and nontyrosinated alpha tubulin are distributed differently in vivo.

Authors:  G G Gundersen; M H Kalnoski; J C Bulinski
Journal:  Cell       Date:  1984-10       Impact factor: 41.582

6.  Structural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition.

Authors:  Masaki Mishima; Ryoko Maesaki; Miyuki Kasa; Takashi Watanabe; Masaki Fukata; Kozo Kaibuchi; Toshio Hakoshima
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-11       Impact factor: 11.205

7.  De novo protein structure generation from incomplete chemical shift assignments.

Authors:  Yang Shen; Robert Vernon; David Baker; Ad Bax
Journal:  J Biomol NMR       Date:  2008-11-26       Impact factor: 2.835

8.  Microtubules are acetylated in domains that turn over slowly.

Authors:  D R Webster; G G Borisy
Journal:  J Cell Sci       Date:  1989-01       Impact factor: 5.285

9.  High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice.

Authors:  Jin Hee Kim; Sang-Rok Lee; Li-Hua Li; Hye-Jeong Park; Jeong-Hoh Park; Kwang Youl Lee; Myeong-Kyu Kim; Boo Ahn Shin; Seok-Yong Choi
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

10.  The mechanism of action of colchicine. Binding of colchincine-3H to cellular protein.

Authors:  G G Borisy; E W Taylor
Journal:  J Cell Biol       Date:  1967-08       Impact factor: 10.539

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  3 in total

Review 1.  Dynamic Microtubule Arrays in Leukocytes and Their Role in Cell Migration and Immune Synapse Formation.

Authors:  Aglaja Kopf; Eva Kiermaier
Journal:  Front Cell Dev Biol       Date:  2021-02-09

Review 2.  The Emerging Roles of Axonemal Glutamylation in Regulation of Cilia Architecture and Functions.

Authors:  Wen-Ting Yang; Shi-Rong Hong; Kai He; Kun Ling; Kritika Shaiv; JingHua Hu; Yu-Chun Lin
Journal:  Front Cell Dev Biol       Date:  2021-03-04

3.  Precise control of microtubule disassembly in living cells.

Authors:  Grace Y Liu; Shiau-Chi Chen; Gang-Hui Lee; Kritika Shaiv; Pin-Yu Chen; Hsuan Cheng; Shi-Rong Hong; Wen-Ting Yang; Shih-Han Huang; Ya-Chu Chang; Hsien-Chu Wang; Ching-Lin Kao; Pin-Chiao Sun; Ming-Hong Chao; Yian-Ying Lee; Ming-Jer Tang; Yu-Chun Lin
Journal:  EMBO J       Date:  2022-06-10       Impact factor: 14.012

  3 in total

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