Literature DB >> 32883834

Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates.

Wei Wang1,2, Chi-Kuo Hu3, An Zeng1, Dana Alegre1, Deqing Hu1, Kirsten Gotting1, Augusto Ortega Granillo1, Yongfu Wang1, Sofia Robb1, Robert Schnittker1, Shasha Zhang1, Dillon Alegre1, Hua Li1, Eric Ross1,2, Ning Zhang1, Anne Brunet3,4, Alejandro Sánchez Alvarado5,2.   

Abstract

Vertebrates vary in their ability to regenerate, and the genetic mechanisms underlying such disparity remain elusive. Comparative epigenomic profiling and single-cell sequencing of two related teleost fish uncovered species-specific and evolutionarily conserved genomic responses to regeneration. The conserved response revealed several regeneration-responsive enhancers (RREs), including an element upstream to inhibin beta A (inhba), a known effector of vertebrate regeneration. This element activated expression in regenerating transgenic fish, and its genomic deletion perturbed caudal fin regeneration and abrogated cardiac regeneration altogether. The enhancer is present in mammals, shares functionally essential activator protein 1 (AP-1)-binding motifs, and responds to injury, but it cannot rescue regeneration in fish. This work suggests that changes in AP-1-enriched RREs are likely a crucial source of loss of regenerative capacities in vertebrates.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32883834      PMCID: PMC9479427          DOI: 10.1126/science.aaz3090

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  40 in total

1.  Heart regeneration in zebrafish.

Authors:  Kenneth D Poss; Lindsay G Wilson; Mark T Keating
Journal:  Science       Date:  2002-12-13       Impact factor: 47.728

2.  Limb regeneration in larvae and metamorphosing individuals of the South African clawed toad.

Authors:  J N DENT
Journal:  J Morphol       Date:  1962-01       Impact factor: 1.804

3.  Acoel genome reveals the regulatory landscape of whole-body regeneration.

Authors:  Andrew R Gehrke; Emily Neverett; Yi-Jyun Luo; Alexander Brandt; Lorenzo Ricci; Ryan E Hulett; Annika Gompers; J Graham Ruby; Daniel S Rokhsar; Peter W Reddien; Mansi Srivastava
Journal:  Science       Date:  2019-03-15       Impact factor: 47.728

Review 4.  From the bush to the bench: the annual Nothobranchius fishes as a new model system in biology.

Authors:  Alessandro Cellerino; Dario R Valenzano; Martin Reichard
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5.  Phosphorylation of Junb family proteins by the Jun N-terminal kinase supports tissue regeneration in zebrafish.

Authors:  Takashi Ishida; Teruhiro Nakajima; Akira Kudo; Atsushi Kawakami
Journal:  Dev Biol       Date:  2010-02-06       Impact factor: 3.582

Review 6.  The bright and the dark sides of activin in wound healing and cancer.

Authors:  Maria Antsiferova; Sabine Werner
Journal:  J Cell Sci       Date:  2012-09-18       Impact factor: 5.285

7.  Activin-betaA signaling is required for zebrafish fin regeneration.

Authors:  Anna Jaźwińska; Rossen Badakov; Mark T Keating
Journal:  Curr Biol       Date:  2007-08-02       Impact factor: 10.834

8.  VISTA: computational tools for comparative genomics.

Authors:  Kelly A Frazer; Lior Pachter; Alexander Poliakov; Edward M Rubin; Inna Dubchak
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

9.  Comparative transcriptomic analysis of dermal wound healing reveals de novo skeletal muscle regeneration in Acomys cahirinus.

Authors:  Jason O Brant; J Lucas Boatwright; Ruth Davenport; Aaron Gabriel W Sandoval; Malcolm Maden; W Brad Barbazuk
Journal:  PLoS One       Date:  2019-05-29       Impact factor: 3.240

10.  Opposite effects of Activin type 2 receptor ligands on cardiomyocyte proliferation during development and repair.

Authors:  Deepika Dogra; Suchit Ahuja; Hyun-Taek Kim; S Javad Rasouli; Didier Y R Stainier; Sven Reischauer
Journal:  Nat Commun       Date:  2017-12-01       Impact factor: 14.919

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  34 in total

1.  Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.

Authors:  Yingxi Cao; Yu Xia; Joseph J Balowski; Jianhong Ou; Lingyun Song; Alexias Safi; Timothy Curtis; Gregory E Crawford; Kenneth D Poss; Jingli Cao
Journal:  Development       Date:  2022-02-18       Impact factor: 6.868

2.  Voltage-gated sodium channel scn8a is required for innervation and regeneration of amputated adult zebrafish fins.

Authors:  Daniel Osorio-Méndez; Andrew Miller; Ian J Begeman; Andrew Kurth; Ryan Hagle; Daniela Rolph; Amy L Dickson; Chen-Hui Chen; Mary Halloran; Kenneth D Poss; Junsu Kang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-06       Impact factor: 12.779

3.  Genetic, Epigenetic, and Post-Transcriptional Basis of Divergent Tissue Regenerative Capacities Among Vertebrates.

Authors:  Sheamin Khyeam; Sukjun Lee; Guo N Huang
Journal:  Adv Genet (Hoboken)       Date:  2021-06

4.  Super-enhancers conserved within placental mammals maintain stem cell pluripotency.

Authors:  Juqing Zhang; Yaqi Zhou; Wei Yue; Zhenshuo Zhu; Xiaolong Wu; Shuai Yu; Qiaoyan Shen; Qin Pan; Wenjing Xu; Rui Zhang; Xiaojie Wu; Xinmei Li; Yayu Li; Yunxiang Li; Yu Wang; Sha Peng; Shiqiang Zhang; Anmin Lei; Xinbao Ding; Fan Yang; Xingqi Chen; Na Li; Mingzhi Liao; Wei Wang; Jinlian Hua
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

5.  Rapid reverse genetics systems for Nothobranchius furzeri, a suitable model organism to study vertebrate aging.

Authors:  Masayuki Oginuma; Moana Nishida; Tomomi Ohmura-Adachi; Kota Abe; Shohei Ogamino; Chihiro Mogi; Hideaki Matsui; Tohru Ishitani
Journal:  Sci Rep       Date:  2022-07-08       Impact factor: 4.996

Review 6.  Genomic enhancers in cardiac development and disease.

Authors:  Chukwuemeka G Anene-Nzelu; Mick C J Lee; Wilson L W Tan; Albert Dashi; Roger S Y Foo
Journal:  Nat Rev Cardiol       Date:  2021-08-11       Impact factor: 32.419

Review 7.  Biodiversity-based development and evolution: the emerging research systems in model and non-model organisms.

Authors:  Long Zhao; Feng Gao; Shan Gao; Yujun Liang; Hongan Long; Zhiyi Lv; Ying Su; Naihao Ye; Liusuo Zhang; Chengtian Zhao; Xiaoyu Wang; Weibo Song; Shicui Zhang; Bo Dong
Journal:  Sci China Life Sci       Date:  2021-04-22       Impact factor: 6.038

8.  A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice.

Authors:  Michael J Abrams; Fayth Hui Tan; Yutian Li; Ty Basinger; Martin L Heithe; Anish Sarma; Iris T Lee; Zevin J Condiotte; Misha Raffiee; John O Dabiri; David A Gold; Lea Goentoro
Journal:  Elife       Date:  2021-12-07       Impact factor: 8.140

9.  Age-Dependent Regulation of Notch Family Members in the Neuronal Stem Cell Niches of the Short-Lived Killifish Nothobranchius furzeri.

Authors:  Sara Bagnoli; Eva Terzibasi Tozzini
Journal:  Front Cell Dev Biol       Date:  2021-07-09

Review 10.  Alternative Animal Models of Aging Research.

Authors:  Susanne Holtze; Ekaterina Gorshkova; Stan Braude; Alessandro Cellerino; Philip Dammann; Thomas B Hildebrandt; Andreas Hoeflich; Steve Hoffmann; Philipp Koch; Eva Terzibasi Tozzini; Maxim Skulachev; Vladimir P Skulachev; Arne Sahm
Journal:  Front Mol Biosci       Date:  2021-05-17
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