Literature DB >> 32880371

A connectome and analysis of the adult Drosophila central brain.

Louis K Scheffer1, C Shan Xu1, Michal Januszewski2, Zhiyuan Lu1,3, Shin-Ya Takemura1, Kenneth J Hayworth1, Gary B Huang1, Kazunori Shinomiya1, Jeremy Maitlin-Shepard4, Stuart Berg1, Jody Clements1, Philip M Hubbard1, William T Katz1, Lowell Umayam1, Ting Zhao1, David Ackerman1, Tim Blakely2, John Bogovic1, Tom Dolafi1, Dagmar Kainmueller1, Takashi Kawase1, Khaled A Khairy1, Laramie Leavitt2, Peter H Li2, Larry Lindsey2, Nicole Neubarth1, Donald J Olbris1, Hideo Otsuna1, Eric T Trautman1, Masayoshi Ito1,5, Alexander S Bates6, Jens Goldammer1,7, Tanya Wolff1, Robert Svirskas1, Philipp Schlegel6, Erika Neace1, Christopher J Knecht1, Chelsea X Alvarado1, Dennis A Bailey1, Samantha Ballinger1, Jolanta A Borycz3, Brandon S Canino1, Natasha Cheatham1, Michael Cook1, Marisa Dreher1, Octave Duclos1, Bryon Eubanks1, Kelli Fairbanks1, Samantha Finley1, Nora Forknall1, Audrey Francis1, Gary Patrick Hopkins1, Emily M Joyce1, SungJin Kim1, Nicole A Kirk1, Julie Kovalyak1, Shirley A Lauchie1, Alanna Lohff1, Charli Maldonado1, Emily A Manley1, Sari McLin3, Caroline Mooney1, Miatta Ndama1, Omotara Ogundeyi1, Nneoma Okeoma1, Christopher Ordish1, Nicholas Padilla1, Christopher M Patrick1, Tyler Paterson1, Elliott E Phillips1, Emily M Phillips1, Neha Rampally1, Caitlin Ribeiro1, Madelaine K Robertson3, Jon Thomson Rymer1, Sean M Ryan1, Megan Sammons1, Anne K Scott1, Ashley L Scott1, Aya Shinomiya1, Claire Smith1, Kelsey Smith1, Natalie L Smith1, Margaret A Sobeski1, Alia Suleiman1, Jackie Swift1, Satoko Takemura1, Iris Talebi1, Dorota Tarnogorska3, Emily Tenshaw1, Temour Tokhi1, John J Walsh1, Tansy Yang1, Jane Anne Horne3, Feng Li1, Ruchi Parekh1, Patricia K Rivlin1, Vivek Jayaraman1, Marta Costa8, Gregory Sxe Jefferis6,8, Kei Ito1,5,7, Stephan Saalfeld1, Reed George1, Ian A Meinertzhagen1,3, Gerald M Rubin1, Harald F Hess1, Viren Jain4, Stephen M Plaza1.   

Abstract

The neural circuits responsible for animal behavior remain largely unknown. We summarize new methods and present the circuitry of a large fraction of the brain of the fruit fly Drosophila melanogaster. Improved methods include new procedures to prepare, image, align, segment, find synapses in, and proofread such large data sets. We define cell types, refine computational compartments, and provide an exhaustive atlas of cell examples and types, many of them novel. We provide detailed circuits consisting of neurons and their chemical synapses for most of the central brain. We make the data public and simplify access, reducing the effort needed to answer circuit questions, and provide procedures linking the neurons defined by our analysis with genetic reagents. Biologically, we examine distributions of connection strengths, neural motifs on different scales, electrical consequences of compartmentalization, and evidence that maximizing packing density is an important criterion in the evolution of the fly's brain.
© 2020, Scheffer et al.

Entities:  

Keywords:  D. melanogaster; brain regions; cell types; computational biology; connectome; connectome reconstuction methods; graph properties; neuroscience; synapse detecton; systems biology

Mesh:

Year:  2020        PMID: 32880371      PMCID: PMC7546738          DOI: 10.7554/eLife.57443

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


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