Literature DB >> 26248563

ITS2 Database V: Twice as Much.

Markus J Ankenbrand1, Alexander Keller1, Matthias Wolf2, Jörg Schultz2, Frank Förster3.   

Abstract

The internal transcribed spacer 2 (ITS2) is a well-established marker for phylogenetic analyses in eukaryotes. A reliable resource for reference sequences and their secondary structures is the ITS2 database (http://its2.bioapps.biozentrum.uni-wuerzburg.de/). However, the database was last updated in 2011. Here, we present a major update of the underlying data almost doubling the number of entities. This increases the number of taxa represented within all major eukaryotic clades. Moreover, additional data has been added to underrepresented groups and some new groups have been added. The broader coverage across the tree of life improves phylogenetic analyses and the capability of ITS2 as a DNA barcode.
© The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  barcoding; database; internal transcribed spacer; phylogeny; sequence-structure; toolbox

Mesh:

Substances:

Year:  2015        PMID: 26248563     DOI: 10.1093/molbev/msv174

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  55 in total

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Journal:  Curr Genet       Date:  2019-08-28       Impact factor: 3.886

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Authors:  Olena Kudlai; Thomas H Cribb; Scott C Cutmore
Journal:  Syst Parasitol       Date:  2016-10-14       Impact factor: 1.431

5.  Diversity and Ecology of Chlorophyta (Viridiplantae) Assemblages in Protected and Non-protected Sites in Deception Island (Antarctica, South Shetland Islands) Assessed Using an NGS Approach.

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6.  Temporal shifts in the mycobiome structure and network architecture associated with a rat (Rattus norvegicus) deep partial-thickness cutaneous burn.

Authors:  Fatemeh Sanjar; Alan J Weaver; Trent J Peacock; Jesse Q Nguyen; Kenneth S Brandenburg; Kai P Leung
Journal:  Med Mycol       Date:  2020-01-01       Impact factor: 4.076

7.  Two monorchiid species from the freckled goatfish, Upeneus tragula Richardson (Perciformes: Mullidae), in Moreton Bay, Australia, including a proposal of a new genus.

Authors:  Nicholas Q-X Wee; Scott C Cutmore; Thomas H Cribb
Journal:  Syst Parasitol       Date:  2018-03-19       Impact factor: 1.431

8.  Transversotrema Witenberg, 1944 (Trematoda: Transversotrematidae) from inshore fishes of Australia: description of a new species and significant range extensions for three congeners.

Authors:  Scott C Cutmore; Ben K Diggles; Thomas H Cribb
Journal:  Syst Parasitol       Date:  2016-08-13       Impact factor: 1.431

9.  Heterobucephalopsine and prosorhynchine trematodes (Digenea: Bucephalidae) from teleost fishes of Moreton Bay, Queensland, Australia, with the description of two new species.

Authors:  Scott C Cutmore; Matthew J Nolan; Thomas H Cribb
Journal:  Syst Parasitol       Date:  2018-10-03       Impact factor: 1.431

10.  Coccomyxa: a dominant planktic alga in two acid lakes of different origin.

Authors:  Dovilė Barcytė; Linda Nedbalová
Journal:  Extremophiles       Date:  2016-12-09       Impact factor: 2.395

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