Literature DB >> 32860017

Host-parasite co-evolution and its genomic signature.

Dieter Ebert1,2, Peter D Fields3.   

Abstract

Studies in diverse biological systems have indicated that host-parasite co-evolution is responsible for the extraordinary genetic diversity seen in some genomic regions, such as major histocompatibility (MHC) genes in jawed vertebrates and resistance genes in plants. This diversity is believed to evolve under balancing selection on hosts by parasites. However, the mechanisms that link the genomic signatures in these regions to the underlying co-evolutionary process are only slowly emerging. We still lack a clear picture of the co-evolutionary concepts and of the genetic basis of the co-evolving phenotypic traits in the interacting antagonists. Emerging genomic tools that provide new options for identifying underlying genes will contribute to a fuller understanding of the co-evolutionary process.

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Year:  2020        PMID: 32860017     DOI: 10.1038/s41576-020-0269-1

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  160 in total

Review 1.  Biological and biomedical implications of the co-evolution of pathogens and their hosts.

Authors:  Mark E J Woolhouse; Joanne P Webster; Esteban Domingo; Brian Charlesworth; Bruce R Levin
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

Review 2.  The co-evolutionary genetics of ecological communities.

Authors:  Michael J Wade
Journal:  Nat Rev Genet       Date:  2007-02-06       Impact factor: 53.242

3.  Long-term balancing selection drives evolution of immunity genes in Capsella.

Authors:  Daniel Koenig; Jörg Hagmann; Rachel Li; Felix Bemm; Tanja Slotte; Barbara Neuffer; Stephen I Wright; Detlef Weigel
Journal:  Elife       Date:  2019-02-26       Impact factor: 8.140

4.  WHEN IS IT COEVOLUTION?

Authors:  Daniel H Janzen
Journal:  Evolution       Date:  1980-05       Impact factor: 3.694

Review 5.  The Nature of Selection on the Major Histocompatibility Complex.

Authors:  Victor Apanius; Dustin Penn; Patricia R Slev; L Ramelle Ruff; Wayne K Potts
Journal:  Crit Rev Immunol       Date:  2017       Impact factor: 2.214

6.  Detecting signatures of past pathogen selection on human HLA loci: are there needles in the haystack?

Authors:  Bridget S Penman; Sunetra Gupta
Journal:  Parasitology       Date:  2017-08-15       Impact factor: 3.234

Review 7.  Genomic variability as a driver of plant-pathogen coevolution?

Authors:  Talia L Karasov; Matthew W Horton; Joy Bergelson
Journal:  Curr Opin Plant Biol       Date:  2014-02-01       Impact factor: 7.834

Review 8.  Host-parasite coevolution: Insights from the Daphnia-parasite model system.

Authors:  Dieter Ebert
Journal:  Curr Opin Microbiol       Date:  2008-06-13       Impact factor: 7.934

9.  Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution.

Authors:  Matteo Fumagalli; Manuela Sironi; Uberto Pozzoli; Anna Ferrer-Admetlla; Anna Ferrer-Admettla; Linda Pattini; Rasmus Nielsen
Journal:  PLoS Genet       Date:  2011-11-03       Impact factor: 5.917

10.  Cryptic haplotype-specific gamete selection yields offspring with optimal MHC immune genes.

Authors:  Tobias L Lenz; Nina Hafer; Irene E Samonte; Sarah E Yeates; Manfred Milinski
Journal:  Evolution       Date:  2018-09-24       Impact factor: 3.694

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  18 in total

1.  Infection phenotypes of a coevolving parasite are highly diverse, structured, and specific.

Authors:  Maridel Fredericksen; Camille Ameline; Michelle Krebs; Benjamin Hüssy; Peter D Fields; Jason P Andras; Dieter Ebert
Journal:  Evolution       Date:  2021-08-30       Impact factor: 4.171

Review 2.  Bacterial origins of human cell-autonomous innate immune mechanisms.

Authors:  Tanita Wein; Rotem Sorek
Journal:  Nat Rev Immunol       Date:  2022-04-08       Impact factor: 108.555

3.  Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina.

Authors:  Antoine Persoons; Agathe Maupetit; Clémentine Louet; Axelle Andrieux; Anna Lipzen; Kerrie W Barry; Hyunsoo Na; Catherine Adam; Igor V Grigoriev; Vincent Segura; Sébastien Duplessis; Pascal Frey; Fabien Halkett; Stéphane De Mita
Journal:  Genome Biol Evol       Date:  2022-01-04       Impact factor: 3.416

Review 4.  Lessons Learnt From Using the Machine Learning Random Forest Algorithm to Predict Virulence in Streptococcus pyogenes.

Authors:  Sean J Buckley; Robert J Harvey
Journal:  Front Cell Infect Microbiol       Date:  2021-12-24       Impact factor: 5.293

5.  A myxozoan genome reveals mosaic evolution in a parasitic cnidarian.

Authors:  Qingxiang Guo; Stephen D Atkinson; Bin Xiao; Yanhua Zhai; Jerri L Bartholomew; Zemao Gu
Journal:  BMC Biol       Date:  2022-02-18       Impact factor: 7.431

6.  Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage.

Authors:  Justine Larrouy; Heba M M Ibrahim; Stefan Kusch; Shantala Mounichetty; Noémie Gasset; Olivier Navaud; Malick Mbengue; Catherine Zanchetta; Céline Lopez-Roques; Cécile Donnadieu; Laurence Godiard; Sylvain Raffaele
Journal:  ISME J       Date:  2021-07-19       Impact factor: 10.302

7.  Genome-Wide Association Analysis Identifies a Genetic Basis of Infectivity in a Model Bacterial Pathogen.

Authors:  Jason P Andras; Peter D Fields; Louis Du Pasquier; Maridel Fredericksen; Dieter Ebert
Journal:  Mol Biol Evol       Date:  2020-12-16       Impact factor: 16.240

Review 8.  Reconstitution and Transmission of Gut Microbiomes and Their Genes between Generations.

Authors:  Eugene Rosenberg; Ilana Zilber-Rosenberg
Journal:  Microorganisms       Date:  2021-12-30

9.  Admixture mapping analysis reveals differential genetic ancestry associated with Chagas disease susceptibility in the Colombian population.

Authors:  Desiré Casares-Marfil; Beatriz Guillen-Guio; Jose M Lorenzo-Salazar; Héctor Rodríguez-Pérez; Martin Kerick; Mayra A Jaimes-Campos; Martha L Díaz; Elkyn Estupiñán; Luis E Echeverría; Clara I González; Javier Martín; Carlos Flores; Marialbert Acosta-Herrera
Journal:  Hum Mol Genet       Date:  2021-11-30       Impact factor: 6.150

10.  Balancing Selection for Pathogen Resistance Reveals an Intercontinental Signature of Red Queen Coevolution.

Authors:  Yann Bourgeois; Peter D Fields; Gilberto Bento; Dieter Ebert
Journal:  Mol Biol Evol       Date:  2021-10-27       Impact factor: 16.240

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