Literature DB >> 32859756

Low-dimensional dynamics for working memory and time encoding.

Christopher J Cueva1,2,3, Alex Saez4, Encarni Marcos5,6, Aldo Genovesio6, Mehrdad Jazayeri7,8, Ranulfo Romo9,10, C Daniel Salzman4,3,11,12,13, Michael N Shadlen4,3,11,12,13, Stefano Fusi1,2,3,11.   

Abstract

Our decisions often depend on multiple sensory experiences separated by time delays. The brain can remember these experiences and, simultaneously, estimate the timing between events. To understand the mechanisms underlying working memory and time encoding, we analyze neural activity recorded during delays in four experiments on nonhuman primates. To disambiguate potential mechanisms, we propose two analyses, namely, decoding the passage of time from neural data and computing the cumulative dimensionality of the neural trajectory over time. Time can be decoded with high precision in tasks where timing information is relevant and with lower precision when irrelevant for performing the task. Neural trajectories are always observed to be low-dimensional. In addition, our results further constrain the mechanisms underlying time encoding as we find that the linear "ramping" component of each neuron's firing rate strongly contributes to the slow timescale variations that make decoding time possible. These constraints rule out working memory models that rely on constant, sustained activity and neural networks with high-dimensional trajectories, like reservoir networks. Instead, recurrent networks trained with backpropagation capture the time-encoding properties and the dimensionality observed in the data.

Keywords:  neural dynamics; recurrent networks; reservoir computing; time decoding; working memory

Mesh:

Year:  2020        PMID: 32859756      PMCID: PMC7502752          DOI: 10.1073/pnas.1915984117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  66 in total

1.  Retrospective and prospective coding for predicted reward in the sensory thalamus.

Authors:  Y Komura; R Tamura; T Uwano; H Nishijo; K Kaga; T Ono
Journal:  Nature       Date:  2001-08-02       Impact factor: 49.962

Review 2.  Toward a neurobiology of temporal cognition: advances and challenges.

Authors:  J Gibbon; C Malapani; C L Dale; C Gallistel
Journal:  Curr Opin Neurobiol       Date:  1997-04       Impact factor: 6.627

Review 3.  Time cells in the hippocampus: a new dimension for mapping memories.

Authors:  Howard Eichenbaum
Journal:  Nat Rev Neurosci       Date:  2014-10-01       Impact factor: 34.870

4.  Recurrent Network Models of Sequence Generation and Memory.

Authors:  Kanaka Rajan; Christopher D Harvey; David W Tank
Journal:  Neuron       Date:  2016-03-10       Impact factor: 17.173

5.  Training Excitatory-Inhibitory Recurrent Neural Networks for Cognitive Tasks: A Simple and Flexible Framework.

Authors:  H Francis Song; Guangyu R Yang; Xiao-Jing Wang
Journal:  PLoS Comput Biol       Date:  2016-02-29       Impact factor: 4.475

6.  Stable and Dynamic Coding for Working Memory in Primate Prefrontal Cortex.

Authors:  Eelke Spaak; Kei Watanabe; Shintaro Funahashi; Mark G Stokes
Journal:  J Neurosci       Date:  2017-05-30       Impact factor: 6.167

7.  Dimensionality in recurrent spiking networks: Global trends in activity and local origins in connectivity.

Authors:  Stefano Recanatesi; Gabriel Koch Ocker; Michael A Buice; Eric Shea-Brown
Journal:  PLoS Comput Biol       Date:  2019-07-12       Impact factor: 4.475

8.  A Neural Mechanism for Sensing and Reproducing a Time Interval.

Authors:  Mehrdad Jazayeri; Michael N Shadlen
Journal:  Curr Biol       Date:  2015-10-08       Impact factor: 10.834

9.  Stochastic variational learning in recurrent spiking networks.

Authors:  Danilo Jimenez Rezende; Wulfram Gerstner
Journal:  Front Comput Neurosci       Date:  2014-04-04       Impact factor: 2.380

10.  Dynamic coding for cognitive control in prefrontal cortex.

Authors:  Mark G Stokes; Makoto Kusunoki; Natasha Sigala; Hamed Nili; David Gaffan; John Duncan
Journal:  Neuron       Date:  2013-04-04       Impact factor: 17.173

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  11 in total

1.  Trial-to-Trial Variability of Spiking Delay Activity in Prefrontal Cortex Constrains Burst-Coding Models of Working Memory.

Authors:  Daming Li; Christos Constantinidis; John D Murray
Journal:  J Neurosci       Date:  2021-09-22       Impact factor: 6.167

Review 2.  The neural bases for timing of durations.

Authors:  Albert Tsao; S Aryana Yousefzadeh; Warren H Meck; May-Britt Moser; Edvard I Moser
Journal:  Nat Rev Neurosci       Date:  2022-09-12       Impact factor: 38.755

3.  Geometry of neural computation unifies working memory and planning.

Authors:  Daniel B Ehrlich; John D Murray
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-06       Impact factor: 12.779

4.  Neural population clocks: Encoding time in dynamic patterns of neural activity.

Authors:  Shanglin Zhou; Dean V Buonomano
Journal:  Behav Neurosci       Date:  2022-04-21       Impact factor: 2.154

5.  Emergence of Nonlinear Mixed Selectivity in Prefrontal Cortex after Training.

Authors:  Wenhao Dang; Russell J Jaffe; Xue-Lian Qi; Christos Constantinidis
Journal:  J Neurosci       Date:  2021-07-22       Impact factor: 6.167

6.  Distributed coding of duration in rodent prefrontal cortex during time reproduction.

Authors:  Josephine Henke; David Bunk; Dina von Werder; Stefan Häusler; Virginia L Flanagin; Kay Thurley
Journal:  Elife       Date:  2021-12-23       Impact factor: 8.140

7.  Emergence of prefrontal neuron maturation properties by training recurrent neural networks in cognitive tasks.

Authors:  Yichen Henry Liu; Junda Zhu; Christos Constantinidis; Xin Zhou
Journal:  iScience       Date:  2021-09-27

8.  Neural Mechanisms of Working Memory Accuracy Revealed by Recurrent Neural Networks.

Authors:  Yuanqi Xie; Yichen Henry Liu; Christos Constantinidis; Xin Zhou
Journal:  Front Syst Neurosci       Date:  2022-02-14

9.  Orthogonal representations for robust context-dependent task performance in brains and neural networks.

Authors:  Timo Flesch; Keno Juechems; Tsvetomira Dumbalska; Andrew Saxe; Christopher Summerfield
Journal:  Neuron       Date:  2022-01-31       Impact factor: 17.173

10.  Unsupervised learning for robust working memory.

Authors:  Jintao Gu; Sukbin Lim
Journal:  PLoS Comput Biol       Date:  2022-05-02       Impact factor: 4.779

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