| Literature DB >> 32841447 |
Xiujuan Shi1, Jiawen Wu1, Yi Liu1, Yuxiong Jiang1, Changjiang Zhi1, Jue Li1,2,3,4.
Abstract
Lung cancer is the leading cause of cancer-related death worldwide. Previous studies revealed that endoplasmic reticulum oxidoreductase 1 alpha (ERO1L) played critical roles in the malignant behaviors of several cancer types, but its role in non-small cell lung cancer (NSCLC) remained unclear. In this study, we identified 26 upregulated and 102 downregulated genes in NSCLC using bioinformatics analyses, and these genes were enriched in the biological processes of the cell cycle. ERO1L was remarkably upregulated in NSCLC and overexpression of ERO1L was associated with poor prognosis of NSCLC. ERO1L deficiency markedly suppressed NSCLC cell proliferation, colony formation, migration, and invasion. ERO1L depletion caused a dramatically decreased expression of cell cycle-related factors in NSCLC cells. Collectively, our data validated that ERO1L could function as a tumor promoter in NSCLC, indicating the potential of targeting ERO1L for the treatment of NSCLC.Entities:
Keywords: ERO1L; NSCLC; TCGA; cell cycle
Mesh:
Substances:
Year: 2020 PMID: 32841447 PMCID: PMC7692932 DOI: 10.1002/cbin.11454
Source DB: PubMed Journal: Cell Biol Int ISSN: 1065-6995 Impact factor: 3.612
Figure 1The DEGs in NSCLC were analyzed using GEO data. (a) Heatmaps of DEGs in GSE18842, GSE19188, GSE30219, and GSE32863. The red color represented the highly expressed genes in tumor tissues and the green color represented the low expression genes. (b) Volcano maps of DEGs in GSE18842, GSE19188, GSE30219, and GSE32863. (c) Venn diagrams of up‐ or downregulated genes in the above four microarray datasets. The Venn diagrams were generated by using Venny 2.1 database. DEGs, differentially expressed genes; GEO, Gene Expression Omnibus; NSCLC, non‐small cell lung cancer
Differentially expressed genes
| Upregulated genes | Downregulated genes |
|---|---|
| GPX2, CDC20, ASPM | ADH1B, AGER, CLIC5, FABP4, CPB2, FCN3, CYP4B1, FOSB, AGR3, FMO2, C7, C4BPA, CACNA2D2, FAM107A, EMCN, GLDN |
| CXCL14, DSP, CCNB2 | FHL1, CFD, GPX3, CD52, CLIC3, CA4, CAV1, GIMAP8, CDO1, ANXA3, C1orf162, CAV2, FOXF1, ADRB2, FCN1, FGR, DPEP2, GADD45B, ABCA3, CYYR1, CDH5, GNG11, GDF10, AQP1, GIMAP7, FBLN5, CAMK2N1, AMICA1, CPA3, CCL2, ESAM, FOS |
| COL10A1, CTHRC1 | CLDN5, CLEC14A, ALOX5AP, CD300LF, EGR1, C14orf132, COX7A1, GMFG, CA2, C5AR1, EPAS1, CD97, DUSP1, CYP27A1 |
| CDCA7, CDH3, ECT2 | DPYSL2, CALCRL, CLEC12A, EMP1, C1QB, EVI2B, ADAMTS1 |
| CEACAM5, AURKA | CD37, C1QA, GIMAP4, GYPC, CLEC1A, CAT, AQP9, FCGR3B |
| AURKB, CDCA5, COL5A2 | FCER1G, CBX7, CH25H, CYB5A, C1orf115, ALDH2, ARHGEF6 |
| COL3A1, CRABP2, GPT2 | BTK, C1orf21, FXYD6, ACVRL1, C20orf85, FZD4, FCGR1B, C9orf24, CCL23, CXCL2, EMP3, CTNNAL1, GPC3, EGR2, FMO3 |
| CST1, F12, FAM83A | |
| COL17A1, ERO1L | C10orf54, FAM65A, AHNAK |
| COL1A1, CCNF |
Figure 2GO and KEGG analysis of the differentially expressed genes in NSCLC. (a) Bubble chart of GO analysis. (b) Circle diagram of the GO analysis. (c) KEGG analysis. BP, biological progress; CC: cell component; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; MF, molecular function; NSCLC, non‐small cell lung cancer
Figure 3The DEGs in NSCLC were analyzed using TCGA data. (a) Heatmaps of DEGs in TCGA data. The red color represented the highly expressed genes in tumor tissues and the green color represented the low expression genes. (b) Volcano map of DEGs in TCGA data. (c) Venn diagrams of up‐ or downregulated genes in the above analysis. (d) The heatmap of these 24 genes expression in NSCLC (using TCGA data). DEGs, differentially expressed genes; GEO, Gene Expression Omnibus; NSCLC, non‐small cell lung cancer; TCGA, The Cancer Genome Atlas
Figure 4Overall survival analysis. (a) Overall survival analysis using GEPIA algorithm. The data (mRNA expressing levels) were based on TCGA dataset. The picture only presented overall survival analysis of the genes which were significantly correlated with overall survival curves of NSCLC patients. The green line represented the low gene expression in tumor tissues and the purple line represented the high gene expression in cancer tissues. (b) Overall survival analysis of CDH3, ERO1L, and FAM83A by using the protein‐expressing data from Human Protein Atlas dataset. GEPIA, Gene Expression Profiling Interactive Analysis; mRNA, messenger RNA; NSCLC, non‐small cell lung cancer; TCGA, The Cancer Genome Atlas
Figure 5Overexpression of ERO1L was correlated with lower overall survival in NSCLC patients. (a) Immunochemical staining analysis of ERO1L by the Human Protein Atlas dataset. (b) The mRNA levels of ERO1L in NSCLC were analyzed by using TCGA data. (c) ERO1L levels across NSCLC stages I–IV were analyzed by the UALCAN algorithm. (d) ERO1L levels across diverse cancer types were analyzed by GEPIA algorithm. (e) Overall survival analysis by Kaplan–Meier Plotter website. (f) The promoter methylation of ERO1L in NSCLC samples (from stages I to IV) was analyzed by the UALCAN algorithm. *p < .05 and **p < .01. ERO1L, endoplasmic reticulum oxidoreductase 1 alpha; GEPIA, Gene Expression Profiling Interactive Analysis; LUAD, lung adenocarcinoma; mRNA, messenger RNA; NSCLC, non‐small cell lung cancer; TCGA, The Cancer Genome Atlas
Figure 6ERO1L regulated the malignant behaviors of NSCLC cells. (a) qPCR detected the mRNA levels of ERO1L in NSCLC cells after silencing ERO1L. (b) Western blot analysis detected ERO1L protein levels in A549 and H1299 cells. (c) CCK‐8 assays were performed to determine the cell proliferation of NSCLC cells after ERO1L depletion. (d) Colony formation assays evaluated the colony formation abilities of NSCLC cells. (e) Wound‐healing assays examined the migration of NSCLC cells. (f) Transwell assays determined the invasion of NSCLC cells. *p < .05 and **p < .01. CCK‐8, Cell Counting Kit‐8; ERO1L, endoplasmic reticulum oxidoreductase 1 alpha; GAPDH, glyceraldehyde‐3‐phosphate dehydrogenase; mRNA, messenger RNA; NSCLC, non‐small cell lung cancer; qPCR, quantitative polymerase chain reaction; TCGA, The Cancer Genome Atlas
Figure 7ERO1L modulated the levels of cell cycle‐related factors. (a) Venn diagram was utilized for drawing the intersection of upregulated genes in lung cancer‐TCGA data and genes positively correlated with ERO1L in lung cancer. The Venn diagrams were generated by using the Venny 2.1 database. (b) The 301 common genes obtained above were utilized for GO analysis. (c) The 301 common genes obtained above were utilized for KEGG analysis. (d) Western blot analysis measured the protein levels of cyclin D1 and CDK6 in NSCLC cells after ERO1L was depleted. (e) Flow cytometry was employed to measure the influence of ERO1L depression on NSCLC cell cycle. BP, biological progress; CC, cell component; ERO1L, endoplasmic reticulum oxidoreductase 1 alpha; GAPDH, glyceraldehyde‐3‐phosphate dehydrogenase; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; LUAD, lung adenocarcinoma; MF, molecular function; NSCLC, non‐small cell lung cancer; TCGA, The Cancer Genome Atlas